Literature DB >> 16809392

PDQ Wizard: automated prioritization and characterization of gene and protein lists using biomedical literature.

G R Grimes1, T Q Wen, M Mewissen, R M Baxter, S Moodie, J S Beattie, P Ghazal.   

Abstract

SUMMARY: PDQ Wizard automates the process of interrogating biomedical references using large lists of genes, proteins or free text. Using the principle of linkage through co-citation biologists can mine PubMed with these proteins or genes to identify relationships within a biological field of interest. In addition, PDQ Wizard provides novel features to define more specific relationships, highlight key publications describing those activities and relationships, and enhance protein queries. PDQ Wizard also outputs a metric that can be used for prioritization of genes and proteins for further research. AVAILABILITY: PDQ Wizard is freely available from http://www.gti.ed.ac.uk/pdqwizard/.

Mesh：

Year:  2006        PMID： 16809392     DOI： 10.1093/bioinformatics/btl342

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  Identification of all-against-all protein-protein interactions based on deep hash learning.

Authors:  Yue Jiang; Yuxuan Wang; Lin Shen; Donald A Adjeroh; Zhidong Liu; Jie Lin
Journal:  BMC Bioinformatics       Date:  2022-07-08       Impact factor: 3.307

2.  Gene List significance at-a-glance with GeneValorization.

Authors:  Bryan Brancotte; Anne Biton; Isabelle Bernard-Pierrot; François Radvanyi; Fabien Reyal; Sarah Cohen-Boulakia
Journal:  Bioinformatics       Date:  2011-02-23       Impact factor: 6.937

3.  BICEPP: an example-based statistical text mining method for predicting the binary characteristics of drugs.

Authors:  Frank P Y Lin; Stephen Anthony; Thomas M Polasek; Guy Tsafnat; Matthew P Doogue
Journal:  BMC Bioinformatics       Date:  2011-04-21       Impact factor: 3.169

4.  Automatic extraction of biomolecular interactions: an empirical approach.

Authors:  Lifeng Zhang; Daniel Berleant; Jing Ding; Eve Syrkin Wurtele
Journal:  BMC Bioinformatics       Date:  2013-07-24       Impact factor: 3.169

5.  PathBinder--text empirics and automatic extraction of biomolecular interactions.

Authors:  Lifeng Zhang; Daniel Berleant; Jing Ding; Tuan Cao; Eve Syrkin Wurtele
Journal:  BMC Bioinformatics       Date:  2009-10-08       Impact factor: 3.169

6.  Identifying hypothetical genetic influences on complex disease phenotypes.

Authors:  Benjamin J Keller; Richard C McEachin
Journal:  BMC Bioinformatics       Date:  2009-02-05       Impact factor: 3.169

Review 7.  Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

Authors:  Martin Krallinger; Alfonso Valencia; Lynette Hirschman
Journal:  Genome Biol       Date:  2008-09-01       Impact factor: 13.583
  7 in total

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