Literature DB >> 16809390

Eicosapentapeptide repeats (EPRs): novel repeat proteins specific to flowering plants.

Sunil Archak1, Javaregowda Nagaraju.   

Abstract

In this report, we describe a novel tandem peptide repeat protein, Eicosapentapeptide repeat (EPR), which occurs notably only in flowering plants. The EPRs are characterized by a 25 amino acid repeat unit, X(2)CX(4)CX(10)CX(2)HGGG, repeated 10 times tandemly. Sequence search revealed that the repeat motif is highly conserved across its occurrence. EPRs are predicted to exist as quasi-globular stable structures owing to highly conserved amino acid positions and potential disulfide bridges. Proteins containing EPRs are predicted to be located in chloroplasts; non-enzymatic and peptide or DNA-binding in molecular function; and they are possibly involved in transcription regulation.

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Year:  2006        PMID: 16809390     DOI: 10.1093/bioinformatics/btl340

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  Computational analyses of protein coded by rice (Oryza sativa japonica) cDNA (GI: 32984786) indicate lectin like Ca(2+) binding properties for Eicosapenta Peptide Repeats (EPRs).

Authors:  Sunil Archak; Javaregowda Nagaraju
Journal:  Bioinformation       Date:  2014-02-19

2.  ST proteins, a new family of plant tandem repeat proteins with a DUF2775 domain mainly found in Fabaceae and Asteraceae.

Authors:  Lucía Albornos; Ignacio Martín; Rebeca Iglesias; Teresa Jiménez; Emilia Labrador; Berta Dopico
Journal:  BMC Plant Biol       Date:  2012-11-07       Impact factor: 4.215

  2 in total

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