Literature DB >> 16807061

FiRe and microarrays: a fast answer to burning questions.

Christophe Garcion1, Richard Baltensperger, Thomas Fournier, Jérôme Pasquier, Marc-Adrien Schnetzer, Jean-Pierre Gabriel, Jean-Pierre Métraux.   

Abstract

FiRe is a user-friendly Excel macro designed to survey microarray data rapidly. This software interactively assembles data from different experiments and produces lists of candidate genes according to patterns of gene expression. Furthermore, macros bundled with FiRe can compare lists of genes, merge information from different spreadsheets, link candidates to information available from web-based databases, and produce heat-maps for easy visualization of microarray data. FiRe is freely available at http://www.unifr.ch/plantbio/FiRe/main.html .

Mesh：

Year:  2006        PMID： 16807061     DOI： 10.1016/j.tplants.2006.05.009

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN： 1360-1385            Impact factor:   18.313


  23 in total

1.  Changes in photosynthetic rates and gene expression of leaves during a source-sink perturbation in sugarcane.

Authors:  A J McCormick; M D Cramer; D A Watt
Journal:  Ann Bot       Date:  2007-10-17       Impact factor: 4.357

2.  Deregulation of MADS-box transcription factor genes in a mutant defective in the WUSCHEL-LIKE HOMEOBOX gene EVERGREEN of Petunia hybrida.

Authors:  M Schorderet; R R Duvvuru Muni; A Fiebig; Didier Reinhardt
Journal:  Plant Signal Behav       Date:  2018-07-11

3.  Ethylene perception via ETR1 is required in Arabidopsis infection by Verticillium dahliae.

Authors:  Iakovos S Pantelides; Sotirios E Tjamos; Epaminondas J Paplomatas
Journal:  Mol Plant Pathol       Date:  2010-03       Impact factor: 5.663

4.  Fluctuating Light Interacts with Time of Day and Leaf Development Stage to Reprogram Gene Expression.

Authors:  Trang Schneider; Anthony Bolger; Jürgen Zeier; Sabine Preiskowski; Vladimir Benes; Sandra Trenkamp; Björn Usadel; Eva M Farré; Shizue Matsubara
Journal:  Plant Physiol       Date:  2019-02-04       Impact factor: 8.340

5.  FfVel1 and FfLae1, components of a velvet-like complex in Fusarium fujikuroi, affect differentiation, secondary metabolism and virulence.

Authors:  Philipp Wiemann; Daren W Brown; Karin Kleigrewe; Jin Woo Bok; Nancy P Keller; Hans-Ulrich Humpf; Bettina Tudzynski
Journal:  Mol Microbiol       Date:  2010-06-21       Impact factor: 3.501

6.  MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis.

Authors:  Volkan Çevik; Brendan N Kidd; Peijun Zhang; Claire Hill; Steve Kiddle; Katherine J Denby; Eric B Holub; David M Cahill; John M Manners; Peer M Schenk; Jim Beynon; Kemal Kazan
Journal:  Plant Physiol       Date:  2012-07-22       Impact factor: 8.340

7.  Analysis of gene expression and physiological responses in three Mexican maize landraces under drought stress and recovery irrigation.

Authors:  Corina Hayano-Kanashiro; Carlos Calderón-Vázquez; Enrique Ibarra-Laclette; Luis Herrera-Estrella; June Simpson
Journal:  PLoS One       Date:  2009-10-30       Impact factor: 3.240

8.  Cross-species hybridization with Fusarium verticillioides microarrays reveals new insights into Fusarium fujikuroi nitrogen regulation and the role of AreA and NMR.

Authors:  Birgit Schönig; Daren W Brown; Birgitt Oeser; Bettina Tudzynski
Journal:  Eukaryot Cell       Date:  2008-08-08

9.  Effects of water-deficit stress on the transcriptomes of developing immature ear and tassel in maize.

Authors:  Yunlong Zhuang; Guijie Ren; Guidong Yue; Zhaoxia Li; Xun Qu; Guihua Hou; Yun Zhu; Juren Zhang
Journal:  Plant Cell Rep       Date:  2007-08-01       Impact factor: 4.570

10.  Dynamics of the shade-avoidance response in Arabidopsis.

Authors:  Andrea Ciolfi; Giovanna Sessa; Massimiliano Sassi; Marco Possenti; Samanta Salvucci; Monica Carabelli; Giorgio Morelli; Ida Ruberti
Journal:  Plant Physiol       Date:  2013-07-26       Impact factor: 8.340
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