Literature DB >> 16803276

Force-dependent fragility in RNA hairpins.

M Manosas1, D Collin, F Ritort.   

Abstract

We apply Kramers theory to investigate the dissociation of multiple bonds under mechanical force and interpret experimental results for the unfolding and refolding force distributions of an RNA hairpin pulled at different loading rates using laser tweezers. We identify two different kinetic regimes depending on the range of forces explored during the unfolding and refolding process. The present approach extends the range of validity of the two-states approximation by providing a theoretical framework to reconstruct free-energy landscapes and identify force-induced structural changes in molecular transition states using single molecule pulling experiments. The method should be applicable to RNA hairpins with multiple kinetic barriers.

Mesh:

Substances:

Year:  2006        PMID: 16803276     DOI: 10.1103/PhysRevLett.96.218301

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  23 in total

1.  Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments.

Authors:  Greg Morrison; Changbong Hyeon; Michael Hinczewski; D Thirumalai
Journal:  Phys Rev Lett       Date:  2011-03-29       Impact factor: 9.161

2.  Mechanical Folding and Unfolding of Protein Barnase at the Single-Molecule Level.

Authors:  Anna Alemany; Blanca Rey-Serra; Silvia Frutos; Ciro Cecconi; Felix Ritort
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

3.  Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

4.  Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins.

Authors:  Olga K Dudko; Jérôme Mathé; Attila Szabo; Amit Meller; Gerhard Hummer
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

5.  Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments.

Authors:  M Manosas; J-D Wen; P T X Li; S B Smith; C Bustamante; I Tinoco; F Ritort
Journal:  Biophys J       Date:  2007-02-09       Impact factor: 4.033

6.  Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA.

Authors:  Gang Chen; Jin-Der Wen; Ignacio Tinoco
Journal:  RNA       Date:  2007-10-24       Impact factor: 4.942

7.  Exact low-force kinetics from high-force single-molecule unfolding events.

Authors:  Jeremiah Nummela; Ioan Andricioaei
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

8.  Mechanically interlocked calix[4]arene dimers display reversible bond breakage under force.

Authors:  Matthias Janke; Yuliya Rudzevich; Olena Molokanova; Thorsten Metzroth; Ingo Mey; Gregor Diezemann; Piotr E Marszalek; Jürgen Gauss; Volker Böhmer; Andreas Janshoff
Journal:  Nat Nanotechnol       Date:  2009-02-08       Impact factor: 39.213

9.  Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes.

Authors:  Changbong Hyeon; Greg Morrison; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-10       Impact factor: 11.205

10.  Reconstructing folding energy landscapes from splitting probability analysis of single-molecule trajectories.

Authors:  Ajay P Manuel; John Lambert; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.