Literature DB >> 16802807

Charging behavior of single-stranded DNA polyelectrolyte brushes.

Gang Shen1, Napoleon Tercero, Mariafrancis A Gaspar, Bindhu Varughese, Kenneth Shepard, Rastislav Levicky.   

Abstract

DNA monolayers are widely used in fundamental and applied genomics and are versatile experimental models for elucidating the behavior of charged polymers at interfaces. The physical behavior of these systems is to a large extent governed by their internal ionic microenvironment, which is investigated here for layers of end-tethered, single-stranded DNA oligonucleotides (DNA brushes). Retention of counterions by the DNA brush manifests as lowered susceptibility of the interfacial capacitance to external salt conditions. A physical model based on concepts adapted from polymer science was used to further elucidate the connection between monolayer organization and its charging behavior. The data indicate a reorganization of the monolayer with changes in ionic strength and strand coverage that is consistent with that expected for a polyelectrolyte brush. A method for electrochemical quantification of strand coverage, based on shift of reduction potential for redox counterions associated with the DNA monolayer, is also described. These results provide guidance for development of label-free electrochemical diagnostics employing DNA monolayers and formulate a description of monolayer behavior within a polymer science framework.

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Year:  2006        PMID: 16802807      PMCID: PMC2527127          DOI: 10.1021/ja0571500

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  36 in total

1.  Modeling of DNA hybridization kinetics for spatially resolved biochips.

Authors:  David Erickson; Dongqing Li; Ulrich J Krull
Journal:  Anal Biochem       Date:  2003-06-15       Impact factor: 3.365

2.  Coulomb blockage of hybridization in two-dimensional DNA arrays.

Authors:  Arnold Vainrub; B Montgomery Pettitt
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-10-17

Review 3.  Physicochemical perspectives on DNA microarray and biosensor technologies.

Authors:  Rastislav Levicky; Adrian Horgan
Journal:  Trends Biotechnol       Date:  2005-03       Impact factor: 19.536

Review 4.  Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity.

Authors:  M T Record; C F Anderson; T M Lohman
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

5.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

6.  The biophysics of DNA hybridization with immobilized oligonucleotide probes.

Authors:  V Chan; D J Graves; S E McKenzie
Journal:  Biophys J       Date:  1995-12       Impact factor: 4.033

7.  Methylene blue as an electrochemical discriminator of single- and double-stranded oligonucleotides immobilised on gold substrates.

Authors:  A Tani; A J Thomson; J N Butt
Journal:  Analyst       Date:  2001-10       Impact factor: 4.616

8.  Hybridization and enzymatic extension of au nanoparticle-bound oligonucleotides.

Authors:  Sheila R Nicewarner Peña; Surabhi Raina; Glenn P Goodrich; Nina V Fedoroff; Christine D Keating
Journal:  J Am Chem Soc       Date:  2002-06-26       Impact factor: 15.419

9.  The interactions of ruthenium hexaammine with Z-DNA: crystal structure of a Ru(NH3)6+3 salt of d(CGCGCG) at 1.2 A resolution.

Authors:  P S Ho; C A Frederick; D Saal; A H Wang; A Rich
Journal:  J Biomol Struct Dyn       Date:  1987-02

10.  Direct electrical detection of hybridization at DNA-modified silicon surfaces.

Authors:  Wei Cai; John R Peck; Daniel W van der Weide; Robert J Hamers
Journal:  Biosens Bioelectron       Date:  2004-04-15       Impact factor: 10.618

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  11 in total

1.  Label-Free Impedance Biosensors: Opportunities and Challenges.

Authors:  Jonathan S Daniels; Nader Pourmand
Journal:  Electroanalysis       Date:  2007-05-16       Impact factor: 3.223

2.  BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.

Authors:  Archana N Rao; David W Grainger
Journal:  Biomater Sci       Date:  2014-04-01       Impact factor: 6.843

3.  Molecular mechanisms in morpholino-DNA surface hybridization.

Authors:  Ping Gong; Kang Wang; Yatao Liu; Kenneth Shepard; Rastislav Levicky
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

4.  Kinetic mechanisms in morpholino-DNA surface hybridization.

Authors:  Yatao Liu; Damion Irving; Wanqiong Qiao; Dongbiao Ge; Rastislav Levicky
Journal:  J Am Chem Soc       Date:  2011-07-12       Impact factor: 15.419

5.  Morpholino monolayers: preparation and label-free DNA analysis by surface hybridization.

Authors:  Napoleon Tercero; Kang Wang; Ping Gong; Rastislav Levicky
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

6.  DNA surface hybridization regimes.

Authors:  Ping Gong; Rastislav Levicky
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-01       Impact factor: 11.205

7.  Real-time, multiplexed electrochemical DNA detection using an active complementary metal-oxide-semiconductor biosensor array with integrated sensor electronics.

Authors:  Peter M Levine; Ping Gong; Rastislav Levicky; Kenneth L Shepard
Journal:  Biosens Bioelectron       Date:  2008-11-01       Impact factor: 10.618

8.  Real-time fluorescent image analysis of DNA spot hybridization kinetics to assess microarray spot heterogeneity.

Authors:  Archana N Rao; Christopher K Rodesch; David W Grainger
Journal:  Anal Chem       Date:  2012-10-29       Impact factor: 6.986

9.  Electrochemical Studies of Morpholino-DNA Surface Hybridization.

Authors:  R O'Connor; N Tercero; W Qiao; R Levicky
Journal:  ECS Trans       Date:  2011

10.  Thermostable DNA immobilization and temperature effects on surface hybridization.

Authors:  Dongbiao Ge; Xin Wang; Keeshan Williams; Rastislav Levicky
Journal:  Langmuir       Date:  2012-05-24       Impact factor: 3.882

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