Literature DB >> 16802792

Charge flipping at work: a case of pseudosymmetry.

Gábor Oszlányi1, András Süto, Mátyás Czugler, László Párkányi.   

Abstract

Charge flipping (CF) is an amazingly simple structure solution method that uses single-crystal X-ray diffraction data. It is truly ab initio, no preliminary information on atom types, chemical composition, or space group symmetry is required. The algorithm is iterative and alternates between real and reciprocal spaces. Its simplest version only changes (flips) the sign of the electron density below a threshold, while in reciprocal space, it prescribes the moduli of observed structure factors. In this communication, we apply the algorithm in practice. The selected example presents a whole range of difficulties: it is large, contains only light atoms, is noncentrosymmetric, and shows a particularly awkward pseudosymmetry. To solve it with any of the traditional methods requires many hours of computer time, followed by a day of expert's handwork to find missing and to remove spurious atoms. In contrast, the CF algorithm provides the complete structure in a few seconds and without human intervention. It is also remarkable that the success rate is 100%, that is, any starting point in the high-dimensional phase space leads to the solution. The treatment of translational pseudosymmetry is obviously a favorable case. Similar resistant structures with pseudosymmetries or ambiguous space groups are the practical applications where the CF method could well complement standard software procedures.

Entities:  

Year:  2006        PMID: 16802792     DOI: 10.1021/ja062131r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  2 in total

1.  The MYTHEN detector for X-ray powder diffraction experiments at the Swiss Light Source.

Authors:  Anna Bergamaschi; Antonio Cervellino; Roberto Dinapoli; Fabia Gozzo; Beat Henrich; Ian Johnson; Philipp Kraft; Aldo Mozzanica; Bernd Schmitt; Xintian Shi
Journal:  J Synchrotron Radiat       Date:  2010-07-22       Impact factor: 2.616

2.  Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry.

Authors:  Blaine H M Mooers
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-24       Impact factor: 7.652

  2 in total

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