Literature DB >> 16793414

Genomic approach for the understanding of dynamic aspect of chromosome behavior.

Yuki Katou1, Kiyofumi Kaneshiro, Hiroyuki Aburatani, Katsuhiko Shirahige.   

Abstract

Various functions are integrated into a single chromosome molecule. The genomic approach (ChIP-chip) we introduce here is a very powerful tool to study dynamic changes of the structure and function of the chromosome at the level of protein-DNA interaction as precisely as possible without prejudice or bias. This technology opens up the way to understand how local protein-protein or protein-DNA interactions lead to the dynamic changes of chromosome structure and how various chromosomal functions are connected to make a network for the faithful maintenance of the genome.

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Year:  2006        PMID: 16793414     DOI: 10.1016/S0076-6879(05)09023-3

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  38 in total

1.  Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype.

Authors:  Marta B Davidson; Yuki Katou; Andrea Keszthelyi; Tina L Sing; Tian Xia; Jiongwen Ou; Jessica A Vaisica; Neroshan Thevakumaran; Lisette Marjavaara; Chad L Myers; Andrei Chabes; Katsuhiko Shirahige; Grant W Brown
Journal:  EMBO J       Date:  2012-01-10       Impact factor: 11.598

2.  Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase.

Authors:  Tania M Roberts; Iram Waris Zaidi; Jessica A Vaisica; Matthias Peter; Grant W Brown
Journal:  Mol Biol Cell       Date:  2007-10-31       Impact factor: 4.138

3.  COUP-TFII acts downstream of Wnt/beta-catenin signal to silence PPARgamma gene expression and repress adipogenesis.

Authors:  Masashi Okamura; Hiromi Kudo; Ken-ichi Wakabayashi; Toshiya Tanaka; Aya Nonaka; Aoi Uchida; Shuichi Tsutsumi; Iori Sakakibara; Makoto Naito; Timothy F Osborne; Takao Hamakubo; Sadayoshi Ito; Hiroyuki Aburatani; Masashi Yanagisawa; Tatsuhiko Kodama; Juro Sakai
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

4.  The Scc2/Scc4 cohesin loader determines the distribution of cohesin on budding yeast chromosomes.

Authors:  Igor Kogut; Jianbin Wang; Vincent Guacci; Rohinton K Mistry; Paul C Megee
Journal:  Genes Dev       Date:  2009-10-01       Impact factor: 11.361

5.  Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

Authors:  Kerstin Kaufmann; Jose M Muiño; Magne Østerås; Laurent Farinelli; Pawel Krajewski; Gerco C Angenent
Journal:  Nat Protoc       Date:  2010-02-18       Impact factor: 13.491

6.  Chromosome length influences replication-induced topological stress.

Authors:  Andreas Kegel; Hanna Betts-Lindroos; Takaharu Kanno; Kristian Jeppsson; Lena Ström; Yuki Katou; Takehiko Itoh; Katsuhiko Shirahige; Camilla Sjögren
Journal:  Nature       Date:  2011-03-02       Impact factor: 49.962

Review 7.  The maintenance of chromosome structure: positioning and functioning of SMC complexes.

Authors:  Kristian Jeppsson; Takaharu Kanno; Katsuhiko Shirahige; Camilla Sjögren
Journal:  Nat Rev Mol Cell Biol       Date:  2014-09       Impact factor: 94.444

8.  High-resolution mapping of DNA methylation in human genome using oligonucleotide tiling array.

Authors:  Hiroshi Hayashi; Genta Nagae; Shuichi Tsutsumi; Kiyofumi Kaneshiro; Takazumi Kozaki; Atsushi Kaneda; Hajime Sugisaki; Hiroyuki Aburatani
Journal:  Hum Genet       Date:  2006-09-26       Impact factor: 4.132

9.  Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.

Authors:  Kazushige Ohtsuki; Koji Kasahara; Katsuhiko Shirahige; Tetsuro Kokubo
Journal:  Nucleic Acids Res       Date:  2009-12-21       Impact factor: 16.971

10.  Transcriptional repression by the Pho4 transcription factor controls the timing of SNZ1 expression.

Authors:  Masafumi Nishizawa; Tae Komai; Nobuyuki Morohashi; Mitsuhiro Shimizu; Akio Toh-e
Journal:  Eukaryot Cell       Date:  2008-04-11
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