Literature DB >> 16791693

Development of simple sequence repeat (SSR) markers and construction of an SSR-based linkage map in Italian ryegrass (Lolium multiflorum Lam.).

Mariko Hirata1, Hongwei Cai, Maiko Inoue, Nana Yuyama, Yuichi Miura, Toshinori Komatsu, Tadashi Takamizo, Masahiro Fujimori.   

Abstract

In order to develop simple sequence repeat (SSR) markers in Italian ryegrass, we constructed a genomic library enriched for (CA)n-containing SSR repeats. A total of 1,544 clones were sequenced, of which 1,044 (67.6%) contained SSR motifs, and 395 unique clones were chosen for primer design. Three hundred and fifty-seven of these clones amplified products of the expected size in both parents of a two-way pseudo-testcross F(1) mapping population, and 260 primer pairs detected genetic polymorphism in the F(1) population. Genetic loci detected by a total of 218 primer pairs were assigned to locations on seven linkage groups, representing the seven chromosomes of the haploid Italian ryegrass karyotype. The SSR markers covered 887.8 cM of the female map and 795.8 cM of the male map. The average distance between two flanking SSR markers was 3.2 cM. The SSR markers developed in this study will be useful in cultivar discrimination, linkage analysis, and marker-assisted selection of Italian ryegrass and closely related species.

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Year:  2006        PMID： 16791693     DOI： 10.1007/s00122-006-0292-4

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  37 in total

1.  Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley.

Authors:  L Ramsay; M Macaulay; L Cardle; M Morgante; S degli Ivanissevich; E Maestri; W Powell; R Waugh
Journal:  Plant J       Date:  1999-02       Impact factor: 6.417

2.  A simple sequence repeat-based linkage map of barley.

Authors:  L Ramsay; M Macaulay; S degli Ivanissevich; K MacLean; L Cardle; J Fuller; K J Edwards; S Tuvesson; M Morgante; A Massari; E Maestri; N Marmiroli; T Sjakste; M Ganal; W Powell; R Waugh
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

3.  Frequency of microsatellite sequences in rice (Oryza sativa L.).

Authors:  O Panaud; X Chen; S R McCouch
Journal:  Genome       Date:  1995-12       Impact factor: 2.166

4.  Rapid isolation of high molecular weight plant DNA.

Authors:  M G Murray; W F Thompson
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

5.  An SSR-based genetic linkage map for perennial ryegrass ( Lolium perenne L.).

Authors:  S. Jones; P. Dupal; L. Dumsday; J. Hughes; W. Forster
Journal:  Theor Appl Genet       Date:  2002-05-23       Impact factor: 5.699

6.  Identification of microsatellite markers linked to Russian wheat aphid resistance genes Dn4 and Dn6.

Authors:  M. Liu; M. Smith; S. Gill
Journal:  Theor Appl Genet       Date:  2002-03-27       Impact factor: 5.699

7.  Tall fescue EST-SSR markers with transferability across several grass species.

Authors:  Malay C Saha; M A Rouf Mian; Imad Eujayl; John C Zwonitzer; Liangjiang Wang; Gregory D May
Journal:  Theor Appl Genet       Date:  2004-06-16       Impact factor: 5.699

8.  Abundance, variability and chromosomal location of microsatellites in wheat.

Authors:  M S Röder; J Plaschke; S U König; A Börner; M E Sorrells; S D Tanksley; M W Ganal
Journal:  Mol Gen Genet       Date:  1995-02-06

9.  Evolution and distribution of (GT)n repetitive sequences in mammalian genomes.

Authors:  R L Stallings; A F Ford; D Nelson; D C Torney; C E Hildebrand; R K Moyzis
Journal:  Genomics       Date:  1991-07       Impact factor: 5.736

10.  Survey of plant short tandem DNA repeats.

Authors:  Z Wang; J L Weber; G Zhong; S D Tanksley
Journal:  Theor Appl Genet       Date:  1994-04       Impact factor: 5.699
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  22 in total

1.  Massive analysis of cDNA ends (MACE) reveals a co-segregating candidate gene for LpPg1 stem rust resistance in perennial ryegrass (Lolium perenne).

Authors:  Jens Bojahr; Ottilia Nhengiwa; Nicolas Krezdorn; Björn Rotter; Bernhard Saal; Brigitte Ruge-Wehling; Christine Struck; Peter Winter
Journal:  Theor Appl Genet       Date:  2016-07-19       Impact factor: 5.699

2.  Development of 1,030 genomic SSR markers in switchgrass.

Authors:  Y W Wang; T D Samuels; Y Q Wu
Journal:  Theor Appl Genet       Date:  2010-10-27       Impact factor: 5.699

3.  Detection of favorable alleles for plant height and crown rust tolerance in three connected populations of perennial ryegrass (Lolium perenne L.).

Authors:  Laurence Pauly; Sandrine Flajoulot; Jérôme Garon; Bernadette Julier; Vincent Béguier; Philippe Barre
Journal:  Theor Appl Genet       Date:  2012-01-11       Impact factor: 5.699

4.  Development of SSR markers and construction of a linkage map in jute.

Authors:  Moumita Das; Sumana Banerjee; Raman Dhariwal; Shailendra Vyas; Reyazul R Mir; Niladri Topdar; Avijit Kundu; Jitendra P Khurana; Akhilesh K Tyagi; Debabrata Sarkar; Mohit K Sinha; Harindra S Balyan; Pushpendra K Gupta
Journal:  J Genet       Date:  2012       Impact factor: 1.166

5.  Sequence-based novel genomic microsatellite markers for robust genotyping purposes in foxtail millet [Setaria italica (L.) P. Beauv].

Authors:  Sarika Gupta; Kajal Kumari; Pranav Pankaj Sahu; Sudhakar Vidapu; Manoj Prasad
Journal:  Plant Cell Rep       Date:  2011-10-13       Impact factor: 4.570

6.  Development and characterization of genomic SSR markers in Cynodon transvaalensis Burtt-Davy.

Authors:  Chengcheng Tan; Yanqi Wu; Charles M Taliaferro; Greg E Bell; Dennis L Martin; Mike W Smith
Journal:  Mol Genet Genomics       Date:  2014-03-02       Impact factor: 3.291

7.  Microsatellites for the genus Cucurbita and an SSR-based genetic linkage map of Cucurbita pepo L.

Authors:  L Gong; G Stift; R Kofler; M Pachner; T Lelley
Journal:  Theor Appl Genet       Date:  2008-04-01       Impact factor: 5.699

8.  Pathotype-specific QTL for stem rust resistance in Lolium perenne.

Authors:  W F Pfender; M E Slabaugh
Journal:  Theor Appl Genet       Date:  2013-01-30       Impact factor: 5.699

9.  SSR-enriched genetic linkage maps of bermudagrass (Cynodon dactylon × transvaalensis), and their comparison with allied plant genomes.

Authors:  Sameer Khanal; Changsoo Kim; Susan A Auckland; Lisa K Rainville; Jeevan Adhikari; Brian M Schwartz; Andrew H Paterson
Journal:  Theor Appl Genet       Date:  2017-02-06       Impact factor: 5.699

10.  Comparative effectiveness of sugar beet microsatellite markers isolated from genomic libraries and GenBank ESTs to map the sugar beet genome.

Authors:  V Laurent; P Devaux; T Thiel; F Viard; S Mielordt; P Touzet; M C Quillet
Journal:  Theor Appl Genet       Date:  2007-07-24       Impact factor: 5.574
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