Literature DB >> 16788266

Calculation of spherical harmonics and Wigner d functions by FFT. Applications to fast rotational matching in molecular replacement and implementation into AMoRe.

Stefano Trapani1, Jorge Navaza.   

Abstract

The FFT calculation of spherical harmonics, Wigner D matrices and rotation function has been extended to all angular variables in the AMoRe molecular replacement software. The resulting code avoids singularity issues arising from recursive formulas, performs faster and produces results with at least the same accuracy as the original code. The new code aims at permitting accurate and more rapid computations at high angular resolution of the rotation function of large particles. Test calculations on the icosahedral IBDV VP2 subviral particle showed that the new code performs on the average 1.5 times faster than the original code.

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Year:  2006        PMID: 16788266     DOI: 10.1107/S0108767306017478

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  2 in total

1.  Spherical-harmonic decomposition for molecular recognition in electron-density maps.

Authors:  Frank P DiMaio; Ameet B Soni; George N Phillips; Jude W Shavlik
Journal:  Int J Data Min Bioinform       Date:  2009       Impact factor: 0.667

2.  AMoRe: classical and modern.

Authors:  Stefano Trapani; Jorge Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
  2 in total

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