Literature DB >> 16782726

Building chromosome-wide LD maps.

María M Abad-Grau1, Rosana Montes, Paola Sebastiani.   

Abstract

SUMMARY: BMapBuilder builds maps of pairwise linkage disequilibrium (LD) in either two or three dimensions. The optimized resolution allows for graphical display of LD for single nucleotide polymorphisms (SNPs) in a whole chromosome. AVAILABILITY: The program is coded in Java, which runs on all relevant operating systems, including Windows, Mac and Unix/Linux, and is available from http://bios.ugr.es/BMapBuilder.

Mesh：

Year:  2006        PMID： 16782726      PMCID： PMC2893229          DOI： 10.1093/bioinformatics/btl288

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  High-resolution haplotype structure in the human genome.

Authors:  M J Daly; J D Rioux; S F Schaffner; T J Hudson; E S Lander
Journal:  Nat Genet       Date:  2001-10       Impact factor: 38.330

2.  Linkage disequilibrium in the human genome.

Authors:  D E Reich; M Cargill; S Bolk; J Ireland; P C Sabeti; D J Richter; T Lavery; R Kouyoumjian; S F Farhadian; R Ward; E S Lander
Journal:  Nature       Date:  2001-05-10       Impact factor: 49.962

3.  The structure of haplotype blocks in the human genome.

Authors:  Stacey B Gabriel; Stephen F Schaffner; Huy Nguyen; Jamie M Moore; Jessica Roy; Brendan Blumenstiel; John Higgins; Matthew DeFelice; Amy Lochner; Maura Faggart; Shau Neen Liu-Cordero; Charles Rotimi; Adebowale Adeyemo; Richard Cooper; Ryk Ward; Eric S Lander; Mark J Daly; David Altshuler
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

4.  A first-generation linkage disequilibrium map of human chromosome 22.

Authors:  Elisabeth Dawson; Gonçalo R Abecasis; Suzannah Bumpstead; Yuan Chen; Sarah Hunt; David M Beare; Jagjit Pabial; Thomas Dibling; Emma Tinsley; Susan Kirby; David Carter; Marianna Papaspyridonos; Simon Livingstone; Rocky Ganske; Elin Lõhmussaar; Jana Zernant; Neeme Tõnisson; Maido Remm; Reedik Mägi; Tarmo Puurand; Jaak Vilo; Ants Kurg; Kate Rice; Panos Deloukas; Richard Mott; Andres Metspalu; David R Bentley; Lon R Cardon; Ian Dunham
Journal:  Nature       Date:  2002-07-10       Impact factor: 49.962

5.  Sampling distribution of summary linkage disequilibrium measures.

Authors:  M D Teare; A M Dunning; F Durocher; G Rennart; D F Easton
Journal:  Ann Hum Genet       Date:  2002-05       Impact factor: 1.670

6.  Haploview: analysis and visualization of LD and haplotype maps.

Authors:  J C Barrett; B Fry; J Maller; M J Daly
Journal:  Bioinformatics       Date:  2004-08-05       Impact factor: 6.937

7.  A haplotype map of the human genome.

Authors: 
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962
  7 in total
  4 in total

1.  Modelling and visualizing fine-scale linkage disequilibrium structure.

Authors:  David Edwards
Journal:  BMC Bioinformatics       Date:  2013-06-06       Impact factor: 3.169

2.  A comparison of genomic profiles of complex diseases under different models.

Authors:  Víctor Potenciano; María Mar Abad-Grau; Antonio Alcina; Fuencisla Matesanz
Journal:  BMC Med Genomics       Date:  2016-01-19       Impact factor: 3.063

3.  Bayesian estimates of linkage disequilibrium.

Authors:  Paola Sebastiani; María M Abad-Grau
Journal:  BMC Genet       Date:  2007-06-25       Impact factor: 2.797

Review 4.  Emerging paradigms in genomics-based crop improvement.

Authors:  Abhishek Bohra
Journal:  ScientificWorldJournal       Date:  2013-11-17
  4 in total

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