Literature DB >> 16779323

Integration of data for gene annotation using the BioMediator system.

B Louie1, P Mork, R Shaker, N Kolker, E Kolker, P Tarczy-Hornoch.   

Abstract

Gene annotation requires integration of data from multiple sources in order to functionally classify genes. We are using BioMediator, a general purpose data-integration solution, to develop a gene annotation system to automate the process of collecting data from disparate genomic databases. Integration of annotation data from multiple sources into a single format will facilitate use of analytic tools for the proper functional classification of genes.

Mesh：

Year:  2005        PMID： 16779323      PMCID： PMC1560885     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN： 1559-4076


  2 in total

1.  The BioMediator system as a data integration tool to answer diverse biologic queries.

Authors:  Loren Donelson; Peter Tarczy-Hornoch; Peter Mork; Cindy Dolan; Joyce A Mitchell; M Barrier; Hao Mei
Journal:  Stud Health Technol Inform       Date:  2004

2.  Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Authors:  Eugene Kolker; Alex F Picone; Michael Y Galperin; Margaret F Romine; Roger Higdon; Kira S Makarova; Natali Kolker; Gordon A Anderson; Xiaoyun Qiu; Kenneth J Auberry; Gyorgy Babnigg; Alex S Beliaev; Paul Edlefsen; Dwayne A Elias; Yuri A Gorby; Ted Holzman; Joel A Klappenbach; Konstantinos T Konstantinidis; Miriam L Land; Mary S Lipton; Lee-Ann McCue; Matthew Monroe; Ljiljana Pasa-Tolic; Grigoriy Pinchuk; Samuel Purvine; Margrethe H Serres; Sasha Tsapin; Brian A Zakrajsek; Wenhong Zhu; Jizhong Zhou; Frank W Larimer; Charles E Lawrence; Monica Riley; Frank R Collart; John R Yates; Richard D Smith; Carol S Giometti; Kenneth H Nealson; James K Fredrickson; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-31       Impact factor: 11.205
  2 in total
  2 in total

1.  Biomedical ontologies in action: role in knowledge management, data integration and decision support.

Authors:  O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

2.  SNPit: a federated data integration system for the purpose of functional SNP annotation.

Authors:  Terry H Shen; Christopher S Carlson; Peter Tarczy-Hornoch
Journal:  Comput Methods Programs Biomed       Date:  2009-03-26       Impact factor: 5.428
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.