Literature DB >> 16779029

Identifying UMLS concepts from ECG Impressions using KnowledgeMap.

Joshua C Denny1, Anderson Spickard, Randolph A Miller, Jonathan Schildcrout, Dawood Darbar, S Trent Rosenbloom, Josh F Peterson.   

Abstract

Electrocardiogram (ECG) impressions represent a wealth of medical information for potential decision support and drug-effect discovery. Much of this information is inaccessible to automated methods in the free-text portion of the ECG report. We studied the application of the KnowledgeMap concept identifier (KMCI) to map Unified Medical Language System (UMLS) concepts from ECG impressions. ECGs were processed by KMCI and the results scored for accuracy by multiple raters. Reviewers also recorded unidentified concepts through the scoring interface. Overall, KMCI correctly identified 1059 out of 1171 concepts for a recall of 0.90. Precision, indicating the proportion of ECG concepts correctly identified, was 0.94. KMCI was particularly effective at identifying ECG rhythms (330/333), perfusion changes (65/66), and noncardiac medical concepts (11/11). In conclusion, KMCI is an effective method for mapping ECG impressions to UMLS concepts.

Mesh:

Year:  2005        PMID: 16779029      PMCID: PMC1479847     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  11 in total

1.  Automated semantic indexing of imaging reports to support retrieval of medical images in the multimedia electronic medical record.

Authors:  H J Lowe; I Antipov; W Hersh; C A Smith; M Mailhot
Journal:  Methods Inf Med       Date:  1999-12       Impact factor: 2.176

2.  UMLS concept indexing for production databases: a feasibility study.

Authors:  P Nadkarni; R Chen; C Brandt
Journal:  J Am Med Inform Assoc       Date:  2001 Jan-Feb       Impact factor: 4.497

3.  "Understanding" medical school curriculum content using KnowledgeMap.

Authors:  Joshua C Denny; Jeffrey D Smithers; Randolph A Miller; Anderson Spickard
Journal:  J Am Med Inform Assoc       Date:  2003-03-28       Impact factor: 4.497

4.  Computer decision support as a source of interpretation error: the case of electrocardiograms.

Authors:  Theodore L Tsai; Douglas B Fridsma; Guido Gatti
Journal:  J Am Med Inform Assoc       Date:  2003-06-04       Impact factor: 4.497

5.  Cardiovascular risk associated with celecoxib in a clinical trial for colorectal adenoma prevention.

Authors:  Scott D Solomon; John J V McMurray; Marc A Pfeffer; Janet Wittes; Robert Fowler; Peter Finn; William F Anderson; Ann Zauber; Ernest Hawk; Monica Bertagnolli
Journal:  N Engl J Med       Date:  2005-02-15       Impact factor: 91.245

6.  Cardiovascular events associated with rofecoxib in a colorectal adenoma chemoprevention trial.

Authors:  Robert S Bresalier; Robert S Sandler; Hui Quan; James A Bolognese; Bettina Oxenius; Kevin Horgan; Christopher Lines; Robert Riddell; Dion Morton; Angel Lanas; Marvin A Konstam; John A Baron
Journal:  N Engl J Med       Date:  2005-02-15       Impact factor: 91.245

7.  Metaphrase: an aid to the clinical conceptualization and formalization of patient problems in healthcare enterprises.

Authors:  M S Tuttle; N E Olson; K D Keck; W G Cole; M S Erlbaum; D D Sherertz; C G Chute; P L Elkin; G E Atkin; B H Kaihoi; C Safran; D Rind; V Law
Journal:  Methods Inf Med       Date:  1998-11       Impact factor: 2.176

8.  Oral erythromycin and the risk of sudden death from cardiac causes.

Authors:  Wayne A Ray; Katherine T Murray; Sarah Meredith; Sukumar Suguna Narasimhulu; Kathi Hall; C Michael Stein
Journal:  N Engl J Med       Date:  2004-09-09       Impact factor: 91.245

9.  The diagnostic performance of computer programs for the interpretation of electrocardiograms.

Authors:  J L Willems; C Abreu-Lima; P Arnaud; J H van Bemmel; C Brohet; R Degani; B Denis; J Gehring; I Graham; G van Herpen
Journal:  N Engl J Med       Date:  1991-12-19       Impact factor: 91.245

10.  A markup language for electrocardiogram data acquisition and analysis (ecgML).

Authors:  Haiying Wang; Francisco Azuaje; Benjamin Jung; Norman Black
Journal:  BMC Med Inform Decis Mak       Date:  2003-05-07       Impact factor: 2.796

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  19 in total

1.  Tracking medical students' clinical experiences using natural language processing.

Authors:  Joshua C Denny; Lisa Bastarache; Elizabeth Ann Sastre; Anderson Spickard
Journal:  J Biomed Inform       Date:  2009-02-21       Impact factor: 6.317

2.  Identifying QT prolongation from ECG impressions using a general-purpose Natural Language Processor.

Authors:  Joshua C Denny; Randolph A Miller; Lemuel Russell Waitman; Mark A Arrieta; Joshua F Peterson
Journal:  Int J Med Inform       Date:  2008-10-19       Impact factor: 4.046

3.  Evaluation of a method to identify and categorize section headers in clinical documents.

Authors:  Joshua C Denny; Anderson Spickard; Kevin B Johnson; Neeraja B Peterson; Josh F Peterson; Randolph A Miller
Journal:  J Am Med Inform Assoc       Date:  2009-08-28       Impact factor: 4.497

4.  Data from clinical notes: a perspective on the tension between structure and flexible documentation.

Authors:  S Trent Rosenbloom; Joshua C Denny; Hua Xu; Nancy Lorenzi; William W Stead; Kevin B Johnson
Journal:  J Am Med Inform Assoc       Date:  2011-01-12       Impact factor: 4.497

5.  Learning to identify treatment relations in clinical text.

Authors:  Cosmin A Bejan; Joshua C Denny
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

6.  Assessing the role of a medication-indication resource in the treatment relation extraction from clinical text.

Authors:  Cosmin Adrian Bejan; Wei-Qi Wei; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

7.  Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records.

Authors:  Mei Liu; Eugenia Renne McPeek Hinz; Michael Edwin Matheny; Joshua C Denny; Jonathan Scott Schildcrout; Randolph A Miller; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2012-11-17       Impact factor: 4.497

8.  A comparison of rule-based and machine learning approaches for classifying patient portal messages.

Authors:  Robert M Cronin; Daniel Fabbri; Joshua C Denny; S Trent Rosenbloom; Gretchen Purcell Jackson
Journal:  Int J Med Inform       Date:  2017-06-23       Impact factor: 4.046

9.  Automated Classification of Consumer Health Information Needs in Patient Portal Messages.

Authors:  Robert M Cronin; Daniel Fabbri; Joshua C Denny; Gretchen Purcell Jackson
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

10.  PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Authors:  Joshua C Denny; Marylyn D Ritchie; Melissa A Basford; Jill M Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Dan R Masys; Dan M Roden; Dana C Crawford
Journal:  Bioinformatics       Date:  2010-03-24       Impact factor: 6.937

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