Literature DB >> 16773566

Using genomic inbreeding coefficient estimates for homozygosity mapping of rare recessive traits: application to Taybi-Linder syndrome.

Anne-Louise Leutenegger1, Audrey Labalme, Emmanuelle Genin, Annick Toutain, Elisabeth Steichen, Francoise Clerget-Darpoux, Patrick Edery.   

Abstract

The use of inbred patients whose exact genealogy may not be available is of primary interest in mapping genes involved in rare recessive diseases. We show here that this can be achieved by estimating inbreeding coefficients from the patients' genomic information and using these estimates to perform homozygosity mapping. We show the interest of the approach by mapping a gene for Taybi-Linder syndrome to chromosome 2q, with the use of a key patient with no genealogical information.

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Year:  2006        PMID: 16773566      PMCID: PMC1474127          DOI: 10.1086/504640

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  9 in total

1.  Allegro, a new computer program for multipoint linkage analysis.

Authors:  D F Gudbjartsson; K Jonasson; M L Frigge; A Kong
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Pitfalls in homozygosity mapping.

Authors:  M G Miano; S G Jacobson; A Carothers; I Hanson; P Teague; J Lovell; A V Cideciyan; N Haider; E M Stone; V C Sheffield; A F Wright
Journal:  Am J Hum Genet       Date:  2000-09-27       Impact factor: 11.025

3.  Impact of parental relationships in maximum lod score affected sib-pair method.

Authors:  Anne-Louise Leutenegger; Emmanuelle Génin; Elizabeth A Thompson; Françoise Clerget-Darpoux
Journal:  Genet Epidemiol       Date:  2002-11       Impact factor: 2.135

4.  A high-resolution recombination map of the human genome.

Authors:  Augustine Kong; Daniel F Gudbjartsson; Jesus Sainz; Gudrun M Jonsdottir; Sigurjon A Gudjonsson; Bjorgvin Richardsson; Sigrun Sigurdardottir; John Barnard; Bjorn Hallbeck; Gisli Masson; Adam Shlien; Stefan T Palsson; Michael L Frigge; Thorgeir E Thorgeirsson; Jeffrey R Gulcher; Kari Stefansson
Journal:  Nat Genet       Date:  2002-06-10       Impact factor: 38.330

5.  Estimation of the inbreeding coefficient through use of genomic data.

Authors:  Anne-Louise Leutenegger; Bernard Prum; Emmanuelle Génin; Christophe Verny; Arnaud Lemainque; Françoise Clerget-Darpoux; Elizabeth A Thompson
Journal:  Am J Hum Genet       Date:  2003-07-29       Impact factor: 11.025

6.  Higher order probability functions of identity of allelles by descent.

Authors:  C C Cockerham
Journal:  Genetics       Date:  1971-10       Impact factor: 4.562

7.  A recursive algorithm for the calculation of identity coefficients.

Authors:  G Karigl
Journal:  Ann Hum Genet       Date:  1981-07       Impact factor: 1.670

Review 8.  Microcephalic osteodysplastic primordial dwarfism Taybi-Linder type: report of four cases and review of the literature.

Authors:  S Sigaudy; A Toutain; A Moncla; C Fredouille; B Bourlière; S Ayme; N Philip
Journal:  Am J Med Genet       Date:  1998-10-30

9.  Homozygosity mapping: a way to map human recessive traits with the DNA of inbred children.

Authors:  E S Lander; D Botstein
Journal:  Science       Date:  1987-06-19       Impact factor: 47.728

  9 in total
  21 in total

1.  Multipoint approximations of identity-by-descent probabilities for accurate linkage analysis of distantly related individuals.

Authors:  Cornelis A Albers; Jim Stankovich; Russell Thomson; Melanie Bahlo; Hilbert J Kappen
Journal:  Am J Hum Genet       Date:  2008-03       Impact factor: 11.025

2.  Runs of homozygosity in European populations.

Authors:  Ruth McQuillan; Anne-Louise Leutenegger; Rehab Abdel-Rahman; Christopher S Franklin; Marijana Pericic; Lovorka Barac-Lauc; Nina Smolej-Narancic; Branka Janicijevic; Ozren Polasek; Albert Tenesa; Andrew K Macleod; Susan M Farrington; Pavao Rudan; Caroline Hayward; Veronique Vitart; Igor Rudan; Sarah H Wild; Malcolm G Dunlop; Alan F Wright; Harry Campbell; James F Wilson
Journal:  Am J Hum Genet       Date:  2008-08-28       Impact factor: 11.025

3.  Population-genetic influences on genomic estimates of the inbreeding coefficient: a global perspective.

Authors:  Trevor J Pemberton; Noah A Rosenberg
Journal:  Hum Hered       Date:  2014-07-29       Impact factor: 0.444

4.  Microcephalic osteodysplastic primordial dwarfism type I with biallelic mutations in the RNU4ATAC gene.

Authors:  R Nagy; H Wang; B Albrecht; D Wieczorek; G Gillessen-Kaesbach; E Haan; P Meinecke; A de la Chapelle; J A Westman
Journal:  Clin Genet       Date:  2011-08-28       Impact factor: 4.438

5.  Consanguinity around the world: what do the genomic data of the HGDP-CEPH diversity panel tell us?

Authors:  Anne-Louise Leutenegger; Mourad Sahbatou; Steven Gazal; Howard Cann; Emmanuelle Génin
Journal:  Eur J Hum Genet       Date:  2011-03-02       Impact factor: 4.246

6.  Progressive myoclonus epilepsies-Residual unsolved cases have marked genetic heterogeneity including dolichol-dependent protein glycosylation pathway genes.

Authors:  Carolina Courage; Karen L Oliver; Eon Joo Park; Jillian M Cameron; Kariona A Grabińska; Mikko Muona; Laura Canafoglia; Antonio Gambardella; Edith Said; Zaid Afawi; Betul Baykan; Christian Brandt; Carlo di Bonaventura; Hui Bein Chew; Chiara Criscuolo; Leanne M Dibbens; Barbara Castellotti; Patrizia Riguzzi; Angelo Labate; Alessandro Filla; Anna T Giallonardo; Geza Berecki; Christopher B Jackson; Tarja Joensuu; John A Damiano; Sara Kivity; Amos Korczyn; Aarno Palotie; Pasquale Striano; Davide Uccellini; Loretta Giuliano; Eva Andermann; Ingrid E Scheffer; Roberto Michelucci; Melanie Bahlo; Silvana Franceschetti; William C Sessa; Samuel F Berkovic; Anna-Elina Lehesjoki
Journal:  Am J Hum Genet       Date:  2021-04-01       Impact factor: 11.025

7.  Genome-wide autozygosity mapping in human populations.

Authors:  Shuang Wang; Chad Haynes; Francis Barany; Jurg Ott
Journal:  Genet Epidemiol       Date:  2009-02       Impact factor: 2.135

8.  A founder mutation in PET100 causes isolated complex IV deficiency in Lebanese individuals with Leigh syndrome.

Authors:  Sze Chern Lim; Katherine R Smith; David A Stroud; Alison G Compton; Elena J Tucker; Ayan Dasvarma; Luke C Gandolfo; Justine E Marum; Matthew McKenzie; Heidi L Peters; David Mowat; Peter G Procopis; Bridget Wilcken; John Christodoulou; Garry K Brown; Michael T Ryan; Melanie Bahlo; David R Thorburn
Journal:  Am J Hum Genet       Date:  2014-01-23       Impact factor: 11.025

9.  Comparative assessment of methods for estimating individual genome-wide homozygosity-by-descent from human genomic data.

Authors:  Ozren Polasek; Caroline Hayward; Celine Bellenguez; Veronique Vitart; Ivana Kolcić; Ruth McQuillan; Vanja Saftić; Ulf Gyllensten; James F Wilson; Igor Rudan; Alan F Wright; Harry Campbell; Anne-Louise Leutenegger
Journal:  BMC Genomics       Date:  2010-02-25       Impact factor: 3.969

10.  HomozygosityMapper--an interactive approach to homozygosity mapping.

Authors:  Dominik Seelow; Markus Schuelke; Friedhelm Hildebrandt; Peter Nürnberg
Journal:  Nucleic Acids Res       Date:  2009-05-21       Impact factor: 16.971

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