Literature DB >> 16772379

Nanoscale detection of organic signatures in carbonate microbialites.

Karim Benzerara1, Nicolas Menguy, Purificación López-García, Tae-Hyun Yoon, Józef Kazmierczak, Tolek Tyliszczak, François Guyot, Gordon E Brown.   

Abstract

Microbialites are sedimentary deposits associated with microbial mat communities and are thought to be evidence of some of the oldest life on Earth. Despite extensive studies of such deposits, little is known about the role of microorganisms in their formation. In addition, unambiguous criteria proving their biogenicity have yet to be established. In this study, we characterize modern calcareous microbialites from the alkaline Lake Van, Turkey, at the nanometer scale by combining x-ray and electron microscopies. We describe a simple way to locate microorganisms entombed in calcium carbonate precipitates by probing aromatic carbon functional groups and peptide bonds. Near-edge x-ray absorption fine structure spectra at the C and N K-edges provide unique signatures for microbes. Aragonite crystals, which range in size from 30 to 100 nm, comprise the largest part of the microbialites. These crystals are surrounded by a 10-nm-thick amorphous calcium carbonate layer containing organic molecules and are embedded in an organic matrix, likely consisting of polysaccharides, which helps explain the unusual sizes and shapes of these crystals. These results provide biosignatures for these deposits and suggest that microbial organisms significantly impacted the mineralogy of Lake Van carbonates.

Entities:  

Year:  2006        PMID: 16772379      PMCID: PMC1480426          DOI: 10.1073/pnas.0603255103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  The role of microbes in accretion, lamination and early lithification of modern marine stromatolites.

Authors:  R P Reid; P T Visscher; A W Decho; J F Stolz; B M Bebout; C Dupraz; I G Macintyre; H W Paerl; J L Pinckney; L Prufert-Bebout; T F Steppe; D J DesMarais
Journal:  Nature       Date:  2000-08-31       Impact factor: 49.962

2.  Scanning transmission X-ray, laser scanning, and transmission electron microscopy mapping of the exopolymeric matrix of microbial biofilms.

Authors:  J R Lawrence; G D W Swerhone; G G Leppard; T Araki; X Zhang; M M West; A P Hitchcock
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

3.  The effect of sodium alginate on the crystal growth of calcium carbonate.

Authors:  F Manoli; E Dalas
Journal:  J Mater Sci Mater Med       Date:  2002-02       Impact factor: 3.896

4.  Confocal imaging of in situ natural microbial communities and their extracellular polymeric secretions using Nanoplast resin.

Authors:  A W Decho; T Kawaguchi
Journal:  Biotechniques       Date:  1999-12       Impact factor: 1.993

5.  Evolution. Life on the early Earth: a sedimentary view.

Authors:  Frances Westall
Journal:  Science       Date:  2005-04-15       Impact factor: 47.728

6.  Whiting events: biogenic origin due to the photosynthetic activity of cyanobacterial picoplankton.

Authors:  J B Thompson; S Schultze-Lam; T J Beveridge; D J Des Marais
Journal:  Limnol Oceanogr       Date:  1997-01       Impact factor: 4.745

Review 7.  Stromatolites in Precambrian carbonates: evolutionary mileposts or environmental dipsticks?

Authors:  J P Grotzinger; A H Knoll
Journal:  Annu Rev Earth Planet Sci       Date:  1999       Impact factor: 12.810

8.  Factors involved in the formation of amorphous and crystalline calcium carbonate: a study of an ascidian skeleton.

Authors:  Joanna Aizenberg; Gretchen Lambert; Steve Weiner; Lia Addadi
Journal:  J Am Chem Soc       Date:  2002-01-09       Impact factor: 15.419

9.  Microbial communities and exopolysaccharides from Polynesian mats.

Authors:  H Rougeaux; M Guezennec; L M Che; C Payri; E Deslandes; J Guezennec
Journal:  Mar Biotechnol (NY)       Date:  2001-03       Impact factor: 3.619

10.  Biomimetic nucleation and growth of CaCO3 in hydrogels incorporating carboxylate groups.

Authors:  Olaf Grassmann; Peer Löbmann
Journal:  Biomaterials       Date:  2004-01       Impact factor: 12.479

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  20 in total

1.  Influence of substrate mineralogy on bacterial mineralization of calcium carbonate: implications for stone conservation.

Authors:  Carlos Rodriguez-Navarro; Fadwa Jroundi; Mara Schiro; Encarnación Ruiz-Agudo; María Teresa González-Muñoz
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

2.  Spatial patterns of carbonate biomineralization in biofilms.

Authors:  Xiaobao Li; David L Chopp; William A Russin; Paul T Brannon; Matthew R Parsek; Aaron I Packman
Journal:  Appl Environ Microbiol       Date:  2015-08-14       Impact factor: 4.792

3.  Specific carbonate-microbe interactions in the modern microbialites of Lake Alchichica (Mexico).

Authors:  Emmanuelle Gérard; Bénédicte Ménez; Estelle Couradeau; David Moreira; Karim Benzerara; Rosaluz Tavera; Purificación López-García
Journal:  ISME J       Date:  2013-06-27       Impact factor: 10.302

4.  In Situ Biomineralization and Particle Deposition Distinctively Mediate Biofilm Susceptibility to Chlorine.

Authors:  Xiaobao Li; David L Chopp; William A Russin; Paul T Brannon; Matthew R Parsek; Aaron I Packman
Journal:  Appl Environ Microbiol       Date:  2016-05-02       Impact factor: 4.792

5.  Calcification and silicification: fossilization potential of cyanobacteria from stromatolites of Niuafo'ou's Caldera Lakes (Tonga) and implications for the early fossil record.

Authors:  Barbara Kremer; Józef Kazmierczak; Maja Lukomska-Kowalczyk; Stephan Kempe
Journal:  Astrobiology       Date:  2012-06       Impact factor: 4.335

6.  Comparative metagenomics unveils functions and genome features of microbialite-associated communities along a depth gradient.

Authors:  Aurélien Saghaï; Yvan Zivanovic; David Moreira; Karim Benzerara; Paola Bertolino; Marie Ragon; Rosaluz Tavera; Ana Isabel López-Archilla; Purificación López-García
Journal:  Environ Microbiol       Date:  2016-08-19       Impact factor: 5.491

7.  Viruses Occur Incorporated in Biogenic High-Mg Calcite from Hypersaline Microbial Mats.

Authors:  Rutger De Wit; Pascale Gautret; Yvan Bettarel; Cécile Roques; Christian Marlière; Michel Ramonda; Thuy Nguyen Thanh; Huy Tran Quang; Thierry Bouvier
Journal:  PLoS One       Date:  2015-06-26       Impact factor: 3.240

8.  Microbial mediated formation of Fe-carbonate minerals under extreme acidic conditions.

Authors:  Mónica Sánchez-Román; David Fernández-Remolar; Ricardo Amils; Antonio Sánchez-Navas; Thomas Schmid; Patxi San Martin-Uriz; Nuria Rodríguez; Judith A McKenzie; Crisogono Vasconcelos
Journal:  Sci Rep       Date:  2014-04-23       Impact factor: 4.379

9.  Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites.

Authors:  Aurélien Saghaï; Yvan Zivanovic; Nina Zeyen; David Moreira; Karim Benzerara; Philippe Deschamps; Paola Bertolino; Marie Ragon; Rosaluz Tavera; Ana I López-Archilla; Purificación López-García
Journal:  Front Microbiol       Date:  2015-08-05       Impact factor: 5.640

Review 10.  Biomineralization of calcium carbonates and their engineered applications: a review.

Authors:  Navdeep K Dhami; M Sudhakara Reddy; Abhijit Mukherjee
Journal:  Front Microbiol       Date:  2013-10-29       Impact factor: 5.640

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