Literature DB >> 16771344

Size dependence of protein diffusion very close to membrane surfaces: measurement by total internal reflection with fluorescence correlation spectroscopy.

Jamie K Pero1, Emily M Haas, Nancy L Thompson.   

Abstract

The diffusion coefficients of nine fluorescently labeled antibodies, antibody fragments, and antibody complexes have been measured in solution very close to supported planar membranes by using total internal reflection with fluorescence correlation spectroscopy (TIR-FCS). The hydrodynamic radii (3-24 nm) of the nine antibody types were determined by comparing literature values with bulk diffusion coefficients measured by spot FCS. The diffusion coefficients very near membranes decreased significantly with molecular size, and the size dependence was greater than that predicted to occur in bulk solution. The observation that membrane surfaces slow the local diffusion coefficient of proteins in a size-dependent manner suggests that the primary effect is hydrodynamic as predicted for simple spheres diffusing close to planar walls. The TIR-FCS data are consistent with predictions derived from hydrodynamic theory. This work illustrates one factor that could contribute to previously observed nonideal ligand-receptor kinetics at model and natural cell membranes.

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Year:  2006        PMID: 16771344     DOI: 10.1021/jp056990y

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  15 in total

1.  Effects of confinement on models of intracellular macromolecular dynamics.

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2.  Probing the functional heterogeneity of surface binding sites by analysis of experimental binding traces and the effect of mass transport limitation.

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Journal:  Biophys J       Date:  2006-12-08       Impact factor: 4.033

3.  Total internal reflection fluorescence correlation spectroscopy: effects of lateral diffusion and surface-generated fluorescence.

Authors:  Jonas Ries; Eugene P Petrov; Petra Schwille
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

4.  Trends in fluorescence imaging and related techniques to unravel biological information.

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Review 5.  The role of mass transport limitation and surface heterogeneity in the biophysical characterization of macromolecular binding processes by SPR biosensing.

Authors:  Peter Schuck; Huaying Zhao
Journal:  Methods Mol Biol       Date:  2010

6.  Rifampicin-independent interactions between the pregnane X receptor ligand binding domain and peptide fragments of coactivator and corepressor proteins.

Authors:  Punya Navaratnarajah; Bridgett L Steele; Matthew R Redinbo; Nancy L Thompson
Journal:  Biochemistry       Date:  2011-12-20       Impact factor: 3.162

7.  Low copy numbers of DC-SIGN in cell membrane microdomains: implications for structure and function.

Authors:  Ping Liu; Xiang Wang; Michelle S Itano; Aaron K Neumann; Aravinda M de Silva; Ken Jacobson; Nancy L Thompson
Journal:  Traffic       Date:  2013-12-03       Impact factor: 6.215

8.  Quantifying green fluorescent protein diffusion in Escherichia coli by using continuous photobleaching with evanescent illumination.

Authors:  Kristin M Slade; Bridgett L Steele; Gary J Pielak; Nancy L Thompson
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

9.  Electrostatic interactions of fluorescent molecules with dielectric interfaces studied by total internal reflection fluorescence correlation spectroscopy.

Authors:  Hans Blom; Kai Hassler; Andriy Chmyrov; Jerker Widengren
Journal:  Int J Mol Sci       Date:  2010-01-28       Impact factor: 5.923

10.  Total internal reflection with fluorescence correlation spectroscopy: Applications to substrate-supported planar membranes.

Authors:  Nancy L Thompson; Xiang Wang; Punya Navaratnarajah
Journal:  J Struct Biol       Date:  2009-03-06       Impact factor: 2.867

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