Literature DB >> 16769677

Algorithmic approaches for identification of RNA editing sites.

Erez Y Levanon1, Eli Eisenberg.   

Abstract

Recently a number of groups have introduced computational methods for the detection of A-to-I RNA editing sites. These approaches have resulted in finding thousands of editing sites within the genomic repeats, as well as a few novel genetic recoding sites. We review these recent advancements, emphasizing the principles underlying the various methods used. Possible directions for extending these methods are discussed.

Mesh:

Year:  2006        PMID: 16769677     DOI: 10.1093/bfgp/ell014

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  3 in total

Review 1.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.

Authors:  Khader Shameer; Lokesh P Tripathi; Krishna R Kalari; Joel T Dudley; Ramanathan Sowdhamini
Journal:  Brief Bioinform       Date:  2015-10-22       Impact factor: 11.622

2.  p150 ADAR1 isoform involved in maintenance of HeLa cell proliferation.

Authors:  Haifang Wang; Zheng Hou; Yumei Wu; Xue Ma; Xiaoxing Luo
Journal:  BMC Cancer       Date:  2006-12-08       Impact factor: 4.430

3.  Comparing methods of detection and quantitation of RNA editing of rat glycine receptor alpha3.

Authors:  Aya Nakae; Tatsuya Tanaka; Keiko Miyake; Makiko Hase; Takashi Mashimo
Journal:  Int J Biol Sci       Date:  2008-10-21       Impact factor: 6.580

  3 in total

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