Literature DB >> 16766526

Three new Nudix hydrolases from Escherichia coli.

Wenlian Xu1, Christopher A Dunn, Suzanne F O'handley, Denise L Smith, Maurice J Bessman.   

Abstract

Three members of the Nudix (nucleoside diphosphate X) hydrolase superfamily have been cloned from Escherichia coli MG1655 and expressed. The proteins have been purified and identified as enzymes active on nucleoside diphosphate derivatives with the following specificities. Orf141 (yfaO) is a nucleoside triphosphatase preferring pyrimidine deoxynucleoside triphosphates. Orf153 (ymfB) is a nonspecific nucleoside tri- and diphosphatase and atypically releases inorganic orthophosphate from triphosphates instead of pyrophosphate. Orf191 (yffH) is a highly active GDP-mannose pyrophosphatase. All three enzymes require a divalent cation for activity and are optimally active at alkaline pH, characteristic of the Nudix hydrolase superfamily. The question of whether or not Orf1.9 (wcaH) is a bona fide member of the Nudix hydrolase superfamily is discussed.

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Year:  2006        PMID: 16766526     DOI: 10.1074/jbc.M603407200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  15 in total

1.  Structural studies of the Nudix GDP-mannose hydrolase from E. coli reveals a new motif for mannose recognition.

Authors:  Agedi N Boto; Wenlian Xu; Jean Jakoncic; Archana Pannuri; Tony Romeo; Maurice J Bessman; Sandra B Gabelli; L Mario Amzel
Journal:  Proteins       Date:  2011-06-02

2.  A novel mutator of Escherichia coli carrying a defect in the dgt gene, encoding a dGTP triphosphohydrolase.

Authors:  Damian Gawel; Michael D Hamilton; Roel M Schaaper
Journal:  J Bacteriol       Date:  2008-09-05       Impact factor: 3.490

3.  A cryptic activity in the Nudix hydrolase superfamily.

Authors:  Maurice J Bessman
Journal:  Protein Sci       Date:  2019-06-24       Impact factor: 6.725

4.  Identification of a Formate-Dependent Uric Acid Degradation Pathway in Escherichia coli.

Authors:  Yumi Iwadate; Jun-Ichi Kato
Journal:  J Bacteriol       Date:  2019-05-08       Impact factor: 3.490

5.  The evolution of function within the Nudix homology clan.

Authors:  John R Srouji; Anting Xu; Annsea Park; Jack F Kirsch; Steven E Brenner
Journal:  Proteins       Date:  2017-03-16

6.  Overexpression, crystallization and preliminary X-ray crystallographic analysis of Nudix hydrolase Orf141 from Escherichia coli K-1.

Authors:  Junho Jung; Yeh-Jin Ahn; Lin-Woo Kang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-31

7.  Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis.

Authors:  Takahisa Ogawa; Kazuya Yoshimura; Hiroe Miyake; Kazuya Ishikawa; Daisuke Ito; Noriaki Tanabe; Shigeru Shigeoka
Journal:  Plant Physiol       Date:  2008-09-24       Impact factor: 8.340

8.  Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.

Authors:  Jérémie Piton; Valéry Larue; Yann Thillier; Audrey Dorléans; Olivier Pellegrini; Inés Li de la Sierra-Gallay; Jean-Jacques Vasseur; Françoise Debart; Carine Tisné; Ciarán Condon
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

9.  A novel plant enzyme with dual activity: an atypical Nudix hydrolase and a dipeptidyl peptidase III.

Authors:  Zrinka Karačić; Bojana Vukelić; Gabrielle H Ho; Iva Jozić; Iva Sučec; Branka Salopek-Sondi; Marija Kozlović; Steven E Brenner; Jutta Ludwig-Müller; Marija Abramić
Journal:  Biol Chem       Date:  2017-01-01       Impact factor: 3.915

10.  Functional and structural characterization of DR_0079 from Deinococcus radiodurans, a novel Nudix hydrolase with a preference for cytosine (deoxy)ribonucleoside 5'-Di- and triphosphates.

Authors:  Garry W Buchko; Olga Litvinova; Howard Robinson; Alexander F Yakunin; Michael A Kennedy
Journal:  Biochemistry       Date:  2008-06-24       Impact factor: 3.162

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