Literature DB >> 16764967

Are network motifs the spandrels of cellular complexity?

Ricard V Solé1, Sergi Valverde.   

Abstract

Cellular networks display modular organization at different levels, from small sets of genes exchanging signals in morphogenesis to large groups of proteins involved in cell death. At the smallest scale, minute groups of interacting proteins or genes, so-called 'network motifs', have been suggested to be the functional building blocks of network biology. In this context, the relative abundance of a network motif would reflect its adaptive value. However, although the overabundance of motifs is non-random, recent studies by Mazurie et al. and by Kuo et al. show that motif abundance does not reflect their true adaptive value. Just as some architectural components emerge as a byproduct of a prior decision, common motifs might be a side effect of inevitable rules of genome growth and change.

Mesh:

Year:  2006        PMID: 16764967     DOI: 10.1016/j.tree.2006.05.013

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  21 in total

1.  Biological network motif detection: principles and practice.

Authors:  Elisabeth Wong; Brittany Baur; Saad Quader; Chun-Hsi Huang
Journal:  Brief Bioinform       Date:  2011-06-20       Impact factor: 11.622

2.  Spontaneous emergence of modularity in cellular networks.

Authors:  Ricard V Solé; Sergi Valverde
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

3.  Distributed robustness in cellular networks: insights from synthetic evolved circuits.

Authors:  Javier Macia; Ricard V Solé
Journal:  J R Soc Interface       Date:  2008-09-16       Impact factor: 4.118

4.  Evolving complexity: how tinkering shapes cells, software and ecological networks.

Authors:  Ricard Solé; Sergi Valverde
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-24       Impact factor: 6.237

5.  A Philosophical Perspective on Evolutionary Systems Biology.

Authors:  Maureen A O'Malley; Orkun S Soyer; Mark L Siegal
Journal:  Biol Theory       Date:  2015-03-01

6.  Evolvability of feed-forward loop architecture biases its abundance in transcription networks.

Authors:  Stefanie Widder; Ricard Solé; Javier Macía
Journal:  BMC Syst Biol       Date:  2012-01-19

7.  Specialized or flexible feed-forward loop motifs: a question of topology.

Authors:  Javier Macía; Stefanie Widder; Ricard Solé
Journal:  BMC Syst Biol       Date:  2009-08-31

8.  Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach.

Authors:  Julio A Freyre-González; José A Alonso-Pavón; Luis G Treviño-Quintanilla; Julio Collado-Vides
Journal:  Genome Biol       Date:  2008-10-27       Impact factor: 13.583

9.  The evolutionary origins of modularity.

Authors:  Jeff Clune; Jean-Baptiste Mouret; Hod Lipson
Journal:  Proc Biol Sci       Date:  2013-01-30       Impact factor: 5.349

10.  The architecture of mutualistic networks as an evolutionary spandrel.

Authors:  Sergi Valverde; Jordi Piñero; Bernat Corominas-Murtra; Jose Montoya; Lucas Joppa; Ricard Solé
Journal:  Nat Ecol Evol       Date:  2017-11-20       Impact factor: 15.460

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