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Literature DB >> 16763938

Isolation of marine bacteria by in situ culture on media-supplemented polyurethane foam.

Mina Yasumoto-Hirose¹, Miyuki Nishijima, Metiek Kimie Ngirchechol, Kaneo Kanoh, Yoshikazu Shizuri, Wataru Miki.

Abstract

Polyurethane foam (PUF) supplemented with various agar media was used in situ to trap marine bacteria and it consequently provided a substrate on which they could be cultivated while exposed to natural seawater in the coral reef area. The bacterial population on the PUF blocks was analyzed by denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction (PCR)-amplified 16S rDNA fragments. Changing the composition of the cultivation medium in the PUF blocks and selecting different sampling sites resulted in different bacteria being detected on the PUF blocks. For example, iron-utilizing (IU) bacteria, siderophore-producing (SP) bacteria, and petroleum-degrading (PD) bacteria were isolated from PUF blocks and it was discovered that IU and SP contained iron and PD contained hydrocarbon. This method opens up the possibility for isolating novel and useful marine bacteria.

Entities: Chemical

Mesh：

Substances：

Year: 2006 PMID： 16763938 DOI： 10.1007/s10126-005-5015-3

Source DB: PubMed Journal: Mar Biotechnol (NY) ISSN： 1436-2228 Impact factor: 3.619

13 in total

Review 1. Petroleum biodegradation in marine environments.

Authors: S Harayama; H Kishira; Y Kasai; K Shutsubo
Journal: J Mol Microbiol Biotechnol Date: 1999-08

Review 2. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors: P Hugenholtz; B M Goebel; N R Pace
Journal: J Bacteriol Date: 1998-09 Impact factor: 3.490

3. Bisucaberin, a new siderophore, sensitizing tumor cells to macrophage-mediated cytolysis. II. Physico-chemical properties and structure determination.

Authors: A Takahashi; H Nakamura; T Kameyama; S Kurasawa; H Naganawa; Y Okami; T Takeuchi; H Umezawa; Y Iitaka
Journal: J Antibiot (Tokyo) Date: 1987-12 Impact factor: 2.649

4. Bisucaberin, a new siderophore, sensitizing tumor cells to macrophage-mediated cytolysis. I. Taxonomy of the producing organism, isolation and biological properties.

Authors: T Kameyama; A Takahashi; S Kurasawa; M Ishizuka; Y Okami; T Takeuchi; H Umezawa
Journal: J Antibiot (Tokyo) Date: 1987-12 Impact factor: 2.649

5. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors: N Saitou; M Nei
Journal: Mol Biol Evol Date: 1987-07 Impact factor: 16.240

6. Universal chemical assay for the detection and determination of siderophores.

Authors: B Schwyn; J B Neilands
Journal: Anal Biochem Date: 1987-01 Impact factor: 3.365

7. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors: J D Thompson; D G Higgins; T J Gibson
Journal: Nucleic Acids Res Date: 1994-11-11 Impact factor: 16.971

8. Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives.

Authors: P Hugenholtz; G W Tyson; R I Webb; A M Wagner; L L Blackall
Journal: Appl Environ Microbiol Date: 2001-01 Impact factor: 4.792

9. Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction.

Authors: J P Bowman; S A McCammon; D S Nichols; J H Skerratt; S M Rea; P D Nichols; T A McMeekin
Journal: Int J Syst Bacteriol Date: 1997-10

6. Ecological and molecular characterization of a coral black band disease outbreak in the Red Sea during a bleaching event.

Authors: Ghaida Hadaidi; Maren Ziegler; Amanda Shore-Maggio; Thor Jensen; Greta Aeby; Christian R Voolstra
Journal: PeerJ Date: 2018-07-12 Impact factor: 2.984

6 in total

Isolation of marine bacteria by in situ culture on media-supplemented polyurethane foam.

Review 1. Petroleum biodegradation in marine environments.

Review 2. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

3. Bisucaberin, a new siderophore, sensitizing tumor cells to macrophage-mediated cytolysis. II. Physico-chemical properties and structure determination.

4. Bisucaberin, a new siderophore, sensitizing tumor cells to macrophage-mediated cytolysis. I. Taxonomy of the producing organism, isolation and biological properties.

5. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

6. Universal chemical assay for the detection and determination of siderophores.

7. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

8. Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives.

9. Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction.

10. Effect of exogenous siderophores on iron uptake activity of marine bacteria under iron-limited conditions.

Review 1. Cultivating the uncultured: limits, advances and future challenges.

Review 2. Ecology and Biotechnological Potential of Bacteria Belonging to the Genus Pseudovibrio.

3. Wenyingzhuangia aestuarii sp. nov., A Marine Bacterium of the Family Flavobacteriaceae Isolated from an Estuary.

4. Biogenic polyamines capture CO2 and accelerate extracellular bacterial CaCO3 formation.

5. MediaDB: a database of microbial growth conditions in defined media.

6. Ecological and molecular characterization of a coral black band disease outbreak in the Red Sea during a bleaching event.