Literature DB >> 16762924

Conformational mobility in the active site of a heme peroxidase.

Sandip K Badyal1, M Gordon Joyce, Katherine H Sharp, Harriet E Seward, Martin Mewies, Jaswir Basran, Isabel K Macdonald, Peter C E Moody, Emma Lloyd Raven.   

Abstract

Conformational mobility of the distal histidine residue has been implicated for several different heme peroxidase enzymes, but unambiguous structural evidence is not available. In this work, we present mechanistic, spectroscopic, and structural evidence for peroxide- and ligand-induced conformational mobility of the distal histidine residue (His-42) in a site-directed variant of ascorbate peroxidase (W41A). In this variant, His-42 binds "on" to the heme in the oxidized form, duplicating the active site structure of the cytochromes b but, in contrast to the cytochromes b, is able to swing "off" the iron during catalysis. This conformational flexibility between the on and off forms is fully reversible and is used as a means to overcome the inherently unreactive nature of the on form toward peroxide, so that essentially complete catalytic activity is maintained. Contrary to the widely adopted view of heme enzyme catalysis, these data indicate that strong coordination of the distal histidine to the heme iron does not automatically undermine catalytic activity. The data add a new dimension to our wider appreciation of structure/activity correlations in other heme enzymes.

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Year:  2006        PMID: 16762924     DOI: 10.1074/jbc.M602602200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  7 in total

1.  Visualizing the protons in a metalloenzyme electron proton transfer pathway.

Authors:  Hanna Kwon; Jaswir Basran; Juliette M Devos; Reynier Suardíaz; Marc W van der Kamp; Adrian J Mulholland; Tobias E Schrader; Andreas Ostermann; Matthew P Blakeley; Peter C E Moody; Emma L Raven
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-09       Impact factor: 11.205

Review 2.  Proximity Dependent Biotinylation: Key Enzymes and Adaptation to Proteomics Approaches.

Authors:  Payman Samavarchi-Tehrani; Reuben Samson; Anne-Claude Gingras
Journal:  Mol Cell Proteomics       Date:  2020-03-03       Impact factor: 5.911

3.  A new regime of heme-dependent aromatic oxygenase superfamily.

Authors:  Inchul Shin; Yifan Wang; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-26       Impact factor: 11.205

4.  Heme binding to human CLOCK affects interactions with the E-box.

Authors:  Samuel L Freeman; Hanna Kwon; Nicola Portolano; Gary Parkin; Umakhanth Venkatraman Girija; Jaswir Basran; Alistair J Fielding; Louise Fairall; Dimitri A Svistunenko; Peter C E Moody; John W R Schwabe; Charalambos P Kyriacou; Emma L Raven
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-16       Impact factor: 11.205

5.  A model for the flexibility of the distal histidine in dehaloperoxidase-hemoglobin A based on X-ray crystal structures of the carbon monoxide adduct.

Authors:  Junjie Zhao; Vesna de Serrano; Stefan Franzen
Journal:  Biochemistry       Date:  2014-04-08       Impact factor: 3.162

6.  Direct visualization of a Fe(IV)-OH intermediate in a heme enzyme.

Authors:  Hanna Kwon; Jaswir Basran; Cecilia M Casadei; Alistair J Fielding; Tobias E Schrader; Andreas Ostermann; Juliette M Devos; Pierre Aller; Matthew P Blakeley; Peter C E Moody; Emma L Raven
Journal:  Nat Commun       Date:  2016-11-29       Impact factor: 14.919

7.  Heme cytotoxicity and the pathogenesis of immune-mediated inflammatory diseases.

Authors:  Rasmus Larsen; Zélia Gouveia; Miguel P Soares; Raffaella Gozzelino
Journal:  Front Pharmacol       Date:  2012-05-04       Impact factor: 5.810

  7 in total

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