Literature DB >> 16755288

Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis.

Jose M Alonso1, Joseph R Ecker.   

Abstract

Genome sequencing, in combination with various computational and empirical approaches to sequence annotation, has made possible the identification of more than 30,000 genes in Arabidopsis thaliana. Increasingly sophisticated genetic tools are being developed with the long-term goal of understanding how the coordinated activity of these genes gives rise to a complex organism. The combination of classical forward genetics with recently developed genome-wide, gene-indexed mutant collections is beginning to revolutionize the way in which gene functions are studied in plants. High-throughput screens using these mutant populations should provide a means to analyse plant gene functions--the phenome--on a genomic scale.

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Year:  2006        PMID: 16755288     DOI: 10.1038/nrg1893

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  71 in total

Review 1.  Natural variation in Arabidopsis: from molecular genetics to ecological genomics.

Authors:  Detlef Weigel
Journal:  Plant Physiol       Date:  2011-12-06       Impact factor: 8.340

2.  Detection of a gravitropism phenotype in glutamate receptor-like 3.3 mutants of Arabidopsis thaliana using machine vision and computation.

Authors:  Nathan D Miller; Tessa L Durham Brooks; Amir H Assadi; Edgar P Spalding
Journal:  Genetics       Date:  2010-07-20       Impact factor: 4.562

Review 3.  Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana.

Authors:  Joy Bergelson; Fabrice Roux
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

4.  Web-based Arabidopsis functional and structural genomics resources.

Authors:  Yan Lu; Robert L Last
Journal:  Arabidopsis Book       Date:  2008-10-28

5.  The PPH1 phosphatase is specifically involved in LHCII dephosphorylation and state transitions in Arabidopsis.

Authors:  Alexey Shapiguzov; Björn Ingelsson; Iga Samol; Charles Andres; Felix Kessler; Jean-David Rochaix; Alexander V Vener; Michel Goldschmidt-Clermont
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

Review 6.  Systems approaches to identifying gene regulatory networks in plants.

Authors:  Terri A Long; Siobhan M Brady; Philip N Benfey
Journal:  Annu Rev Cell Dev Biol       Date:  2008       Impact factor: 13.827

7.  Efficient isolation of ion beam-induced mutants for homoeologous loci in common wheat and comparison of the contributions of Glu-1 loci to gluten functionality.

Authors:  Yushuang Yang; Shiming Li; Kunpu Zhang; Zhenying Dong; Yiwen Li; Xueli An; Jing Chen; Qiufang Chen; Zhen Jiao; Xin Liu; Huanju Qin; Daowen Wang
Journal:  Theor Appl Genet       Date:  2013-11-09       Impact factor: 5.699

8.  A reverse genetics approach identifies novel mutants in light responses and anthocyanin metabolism in petunia.

Authors:  Amanda S Berenschot; Vera Quecini
Journal:  Physiol Mol Biol Plants       Date:  2013-12-08

9.  A set of modular binary vectors for transformation of cereals.

Authors:  Axel Himmelbach; Uwe Zierold; Götz Hensel; Jan Riechen; Dimitar Douchkov; Patrick Schweizer; Jochen Kumlehn
Journal:  Plant Physiol       Date:  2007-11-02       Impact factor: 8.340

10.  Large-scale reverse genetics in Arabidopsis: case studies from the Chloroplast 2010 Project.

Authors:  Imad Ajjawi; Yan Lu; Linda J Savage; Shannon M Bell; Robert L Last
Journal:  Plant Physiol       Date:  2009-11-11       Impact factor: 8.340

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