Literature DB >> 16754974

Preliminary X-ray diffraction analysis of the cytoplasmic N-terminal domain of the Na/HCO3 cotransporter NBCe1-A.

Harindarpal S Gill1, Walter F Boron.   

Abstract

The N-terminal cytoplasmic domain of the Na+-coupled HCO_3- cotransporter NBCe1-A (NtNBCe1) has been linked with proximal renal tubular acidosis. In a previous purification study of recombinant NtNBCe1, crystal growth at a suboptimal protein concentration (<1 mg ml(-1)) yielded small single diamond-shaped crystals that diffracted poorly. In the present study, by increasing the protein concentration 50-fold, the crystal size was doubled and robustness was also improved. Crystal annealing made the crystals suitable for X-ray diffraction. The crystals either belong to space group P3(1)21 or P3(1) with pseudo P3(1)21 symmetry, with unit-cell parameters a = 51.7, b = 51.7, c = 200.6 A, alpha = beta = 90, gamma = 120 degrees , and diffract X-rays to 3.0 A resolution. The calculated Matthews number is 1.9 A3 Da(-1), with two monomers of molecular weight approximately 83 kDa in the asymmetric unit. The molecular- replacement packing solution shows that the molecules form dimers by a domain-swapping mechanism.

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Year:  2006        PMID: 16754974      PMCID: PMC2243095          DOI: 10.1107/S1744309106015181

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

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Authors:  D Zhang; A Kiyatkin; J T Bolin; P S Low
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Authors:  M F Romero; M A Hediger; E L Boulpaep; W F Boron
Journal:  Nature       Date:  1997-05-22       Impact factor: 49.962

Review 4.  Structure and function of the cytoplasmic domain of band 3: center of erythrocyte membrane-peripheral protein interactions.

Authors:  P S Low
Journal:  Biochim Biophys Acta       Date:  1986-09-22

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 6.  Renal tubular acidosis: developments in our understanding of the molecular basis.

Authors:  Christopher M Laing; Ashley M Toye; Giovambattista Capasso; Robert J Unwin
Journal:  Int J Biochem Cell Biol       Date:  2005-06       Impact factor: 5.085

7.  Crystallization and preliminary X-ray analysis of the cytoplasmic domain of human erythrocyte band 3.

Authors:  A B Kiyatkin; P Natarajan; S Munshi; W Minor; J E Johnson; P S Low
Journal:  Proteins       Date:  1995-07

Review 8.  Unraveling the molecular pathogenesis of isolated proximal renal tubular acidosis.

Authors:  Takashi Igarashi; Takashi Sekine; Jun Inatomi; George Seki
Journal:  J Am Soc Nephrol       Date:  2002-08       Impact factor: 10.121

Review 9.  Regulation of intracellular pH.

Authors:  Walter F Boron
Journal:  Adv Physiol Educ       Date:  2004-12       Impact factor: 2.288

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Authors:  W F Boron; E L Boulpaep
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  14 in total

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Authors:  Mark D Parker; Walter F Boron
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3.  Exploring the autoinhibitory domain of the electrogenic Na+ /HCO3- transporter NBCe1-B, from residues 28 to 62.

Authors:  Seong-Ki Lee; Walter F Boron
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Review 4.  Modular structure of sodium-coupled bicarbonate transporters.

Authors:  Walter F Boron; Liming Chen; Mark D Parker
Journal:  J Exp Biol       Date:  2009-06       Impact factor: 3.312

5.  Cloning and characterization of novel human SLC4A8 gene products encoding Na+-driven Cl-/HCO3(-) exchanger variants NDCBE-A, -C, and -D.

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6.  NBCe1A dimer assemble visualized by bimolecular fluorescence complementation.

Authors:  Min-Hwang Chang; An-Ping Chen; Michael F Romero
Journal:  Am J Physiol Renal Physiol       Date:  2014-01-29

7.  Oligomeric structure and minimal functional unit of the electrogenic sodium bicarbonate cotransporter NBCe1-A.

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8.  SLC4A transporters.

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9.  Rescue of the temperature-sensitive, autosomal-recessive mutation R298S in the sodium-bicarbonate cotransporter NBCe1-A characterized by a weakened dimer and abnormal aggregation.

Authors:  Harindarpal S Gill; Kun-Young Choi; Lakshmi Kammili; Anastas Popratiloff
Journal:  Biochim Biophys Acta       Date:  2015-03-03

10.  pH-sensitive self-associations of the N-terminal domain of NBCe1-A suggest a compact conformation under acidic intracellular conditions.

Authors:  Harindarpal S Gill
Journal:  Protein Pept Lett       Date:  2012-10       Impact factor: 1.890

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