Literature DB >> 16752214

On the paucity of duplicated genes in Caenorhabditis elegans operons.

Andre R O Cavalcanti1, Nicholas A Stover, Laura F Landweber.   

Abstract

Spliced leader trans-splicing is an mRNA maturation process used by a small set of eukaryotes, including the nematode C. elegans, to cap the downstream genes of operons. We analyzed the frequency of duplication of operonic genes in C. elegans and confirmed that they are duplicated less often in the genome than monocistronic genes. Because operons account for about 15% of the genes in C. elegans, this lower duplication frequency might place a large constraint on the plasticity of the genome. Further analyses suggest that this paucity of duplicated genes results from operon organization hindering specific types of gene duplication.

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Year:  2006        PMID: 16752214     DOI: 10.1007/s00239-005-0203-3

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  32 in total

1.  mRNA 5'-leader trans-splicing in the chordates.

Authors:  A E Vandenberghe; T H Meedel; K E Hastings
Journal:  Genes Dev       Date:  2001-02-01       Impact factor: 11.361

2.  Twilight zone of protein sequence alignments.

Authors:  B Rost
Journal:  Protein Eng       Date:  1999-02

3.  Modeling gene and genome duplications in eukaryotes.

Authors:  Steven Maere; Stefanie De Bodt; Jeroen Raes; Tineke Casneuf; Marc Van Montagu; Martin Kuiper; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

4.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

5.  Inversions with deletions and duplications.

Authors:  A J Gordon; J A Halliday
Journal:  Genetics       Date:  1995-05       Impact factor: 4.562

6.  Trans-splicing and cis-splicing in the colourless Euglenoid, Entosiphon sulcatum.

Authors:  C Ebel; C Frantz; F Paulus; P Imbault
Journal:  Curr Genet       Date:  1999-06       Impact factor: 3.886

7.  Trans-spliced leader addition to mRNAs in a cnidarian.

Authors:  N A Stover; R E Steele
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

8.  Dosage sensitivity and the evolution of gene families in yeast.

Authors:  Balázs Papp; Csaba Pál; Laurence D Hurst
Journal:  Nature       Date:  2003-07-10       Impact factor: 49.962

9.  The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome.

Authors:  Vaishali Katju; Michael Lynch
Journal:  Genetics       Date:  2003-12       Impact factor: 4.562

10.  Patterns of gene duplication in Saccharomyces cerevisiae and Caenorhabditis elegans.

Authors:  Andre R O Cavalcanti; Ricardo Ferreira; Zhenglong Gu; Wen-Hsiung Li
Journal:  J Mol Evol       Date:  2003-01       Impact factor: 2.395

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  3 in total

1.  Does negative auto-regulation increase gene duplicability?

Authors:  Tobias Warnecke; Guang-Zhong Wang; Martin J Lercher; Laurence D Hurst
Journal:  BMC Evol Biol       Date:  2009-08-07       Impact factor: 3.260

2.  Evolutionary dynamics of nematode operons: easy come, slow go.

Authors:  Wenfeng Qian; Jianzhi Zhang
Journal:  Genome Res       Date:  2008-01-24       Impact factor: 9.043

3.  Non-random retention of protein-coding overlapping genes in Metazoa.

Authors:  Giulia Soldà; Mikita Suyama; Paride Pelucchi; Silvia Boi; Alessandro Guffanti; Ermanno Rizzi; Peer Bork; Maria Luisa Tenchini; Francesca D Ciccarelli
Journal:  BMC Genomics       Date:  2008-04-16       Impact factor: 3.969

  3 in total

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