Literature DB >> 16751894

Reinforced molecular recognition as an alternative to rigid receptors.

Sijbren Otto1.   

Abstract

In theory, a perfectly rigid receptor will probably be an unbeatable binder. However, rigidity may not be easy to achieve in practice and it is certainly not Nature's method to realise high affinity. In many proteins binding affinity is increased through non-covalent interactions within the protein. Thus there is a considerable incentive to follow Nature's example and start exploring the use of secondary intra-receptor interactions to aid in the binding process. Secondary interactions within a receptor will reinforce host-guest binding when the same conformational rearrangement (or freezing of motion) is required for guest binding as for the formation of the intra-receptor interactions. Introducing secondary interactions will require rather elaborate synthetic receptors to be produced. With the recent developments in dynamic combinatorial chemistry, access to the desired structures should be facilitated. Whether or not this approach will develop into a practical method remains to be established, but even if it does not, efforts along these lines will lead to a better understanding of the complex interplay between molecular recognition, folding and dynamics.

Entities:  

Year:  2006        PMID: 16751894     DOI: 10.1039/b515817f

Source DB:  PubMed          Journal:  Dalton Trans        ISSN: 1477-9226            Impact factor:   4.390


  3 in total

1.  Investigation of a Catenane with a Responsive Noncovalent Network: Mimicking Long-Range Responses in Proteins.

Authors:  Mee-Kyung Chung; Peter S White; Stephen J Lee; Michel R Gagné; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2016-09-29       Impact factor: 15.419

2.  Evolutionarily evolved discriminators in the 3-TPR domain of the Toc64 family involved in protein translocation at the outer membrane of chloroplasts and mitochondria.

Authors:  Oliver Mirus; Tihana Bionda; Arndt von Haeseler; Enrico Schleiff
Journal:  J Mol Model       Date:  2009-02-06       Impact factor: 1.810

3.  The flexibility-complementarity dichotomy in receptor-ligand interactions.

Authors:  Hongmei Sun; Christopher A Hunter; Eva Marina Llamas
Journal:  Chem Sci       Date:  2014-12-15       Impact factor: 9.825

  3 in total

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