Literature DB >> 16751602

X-ray structure of potato epoxide hydrolase sheds light on substrate specificity in plant enzymes.

Sherry L Mowbray1, Lisa T Elfström, Kerstin M Ahlgren, C Evalena Andersson, Mikael Widersten.   

Abstract

Epoxide hydrolases catalyze the conversion of epoxides to diols. The known functions of such enzymes include detoxification of xenobiotics, drug metabolism, synthesis of signaling compounds, and intermediary metabolism. In plants, epoxide hydrolases are thought to participate in general defense systems. In the present study, we report the first structure of a plant epoxide hydrolase, one of the four homologous enzymes found in potato. The structure was solved by molecular replacement and refined to a resolution of 1.95 A. Analysis of the structure allows a better understanding of the observed substrate specificities and activity. Further, comparisons with mammalian and fungal epoxide hydrolase structures reported earlier show the basis of differing substrate specificities in the various epoxide hydrolase subfamilies. Most plant enzymes, like the potato epoxide hydrolase, are expected to be monomers with a preference for substrates with long lipid-like substituents of the epoxide ring. The significance of these results in the context of biological roles and industrial applications is discussed.

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Year:  2006        PMID: 16751602      PMCID: PMC2265100          DOI: 10.1110/ps.051792106

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  31 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Detoxification of environmental mutagens and carcinogens: structure, mechanism, and evolution of liver epoxide hydrolase.

Authors:  M A Argiriadi; C Morisseau; B D Hammock; D W Christianson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

3.  Sequence and structure of epoxide hydrolases: a systematic analysis.

Authors:  Sandra Barth; Markus Fischer; Rolf D Schmid; Jürgen Pleiss
Journal:  Proteins       Date:  2004-06-01

4.  Detecting folding motifs and similarities in protein structures.

Authors:  G J Kleywegt; T A Jones
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Phi/psi-chology: Ramachandran revisited.

Authors:  G J Kleywegt; T A Jones
Journal:  Structure       Date:  1996-12-15       Impact factor: 5.006

6.  Binding of alkylurea inhibitors to epoxide hydrolase implicates active site tyrosines in substrate activation.

Authors:  M A Argiriadi; C Morisseau; M H Goodrow; D L Dowdy; B D Hammock; D W Christianson
Journal:  J Biol Chem       Date:  2000-05-19       Impact factor: 5.157

7.  Determination of the structures of cutin monomers by a novel depolymerization procedure and combined gas chromatography and mass spectrometry.

Authors:  T J Walton; P E Kolattukudy
Journal:  Biochemistry       Date:  1972-05-09       Impact factor: 3.162

8.  Purification, molecular cloning and ethylene-inducible expression of a soluble-type epoxide hydrolase from soybean (Glycine max [L.] Merr.).

Authors:  M Arahira; V H Nong; K Udaka; C Fukazawa
Journal:  Eur J Biochem       Date:  2000-05

9.  The x-ray structure of epoxide hydrolase from Agrobacterium radiobacter AD1. An enzyme to detoxify harmful epoxides.

Authors:  M Nardini; I S Ridder; H J Rozeboom; K H Kalk; R Rink; D B Janssen; B W Dijkstra
Journal:  J Biol Chem       Date:  1999-05-21       Impact factor: 5.157

10.  Implications for an ionized alkyl-enzyme intermediate during StEH1-catalyzed trans-stilbene oxide hydrolysis.

Authors:  Lisa T Elfström; Mikael Widersten
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

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  17 in total

1.  Removal of distal protein-water hydrogen bonds in a plant epoxide hydrolase increases catalytic turnover but decreases thermostability.

Authors:  Ann Thomaeus; Agata Naworyta; Sherry L Mowbray; Mikael Widersten
Journal:  Protein Sci       Date:  2008-05-30       Impact factor: 6.725

2.  Engineering of an epoxide hydrolase for efficient bioresolution of bulky pharmaco substrates.

Authors:  Xu-Dong Kong; Shuguang Yuan; Lin Li; She Chen; Jian-He Xu; Jiahai Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-20       Impact factor: 11.205

3.  X-Ray crystallographic and mutational studies of fluoroacetate dehalogenase from Burkholderia sp. strain FA1.

Authors:  Keiji Jitsumori; Rie Omi; Tatsuo Kurihara; Atsushi Kurata; Hisaaki Mihara; Ikuko Miyahara; Ken Hirotsu; Nobuyoshi Esaki
Journal:  J Bacteriol       Date:  2009-02-13       Impact factor: 3.490

4.  Flavonoid profiling and transcriptome analysis reveals new gene-metabolite correlations in tubers of Solanum tuberosum L.

Authors:  Cecil Stushnoff; Laurence J M Ducreux; Robert D Hancock; Pete E Hedley; David G Holm; Gordon J McDougall; James W McNicol; Jenny Morris; Wayne L Morris; Julie A Sungurtas; Susan R Verrall; Tatiana Zuber; Mark A Taylor
Journal:  J Exp Bot       Date:  2010-01-28       Impact factor: 6.992

5.  Characterization of the SgcF epoxide hydrolase supporting an (R)-vicinal diol intermediate for enediyne antitumor antibiotic C-1027 biosynthesis.

Authors:  Shuangjun Lin; Geoffrey P Horsman; Yihua Chen; Wenli Li; Ben Shen
Journal:  J Am Chem Soc       Date:  2009-11-18       Impact factor: 15.419

6.  CLD1 Reverses the Ubiquinone Insufficiency of Mutant cat5/coq7 in a Saccharomyces cerevisiae Model System.

Authors:  Adwitiya Kar; Haley Beam; Megan B Borror; Michael Luckow; Xiaoli Gao; Shane L Rea
Journal:  PLoS One       Date:  2016-09-07       Impact factor: 3.240

7.  Expanding the Catalytic Triad in Epoxide Hydrolases and Related Enzymes.

Authors:  Beat A Amrein; Paul Bauer; Fernanda Duarte; Åsa Janfalk Carlsson; Agata Naworyta; Sherry L Mowbray; Mikael Widersten; Shina C L Kamerlin
Journal:  ACS Catal       Date:  2015-08-17       Impact factor: 13.084

8.  Laboratory-Evolved Enzymes Provide Snapshots of the Development of Enantioconvergence in Enzyme-Catalyzed Epoxide Hydrolysis.

Authors:  Åsa Janfalk Carlsson; Paul Bauer; Doreen Dobritzsch; Mikael Nilsson; S C Lynn Kamerlin; Mikael Widersten
Journal:  Chembiochem       Date:  2016-08-02       Impact factor: 3.164

9.  Conformational diversity and enantioconvergence in potato epoxide hydrolase 1.

Authors:  P Bauer; Å Janfalk Carlsson; B A Amrein; D Dobritzsch; M Widersten; S C L Kamerlin
Journal:  Org Biomol Chem       Date:  2016-04-06       Impact factor: 3.876

Review 10.  Epoxide hydrolysis as a model system for understanding flux through a branched reaction scheme.

Authors:  Åsa Janfalk Carlsson; Paul Bauer; Doreen Dobritzsch; Shina C L Kamerlin; Mikael Widersten
Journal:  IUCrJ       Date:  2018-03-22       Impact factor: 4.769

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