Literature DB >> 16737953

Proteomics-based expression library screening (PELS): a novel method for rapidly defining microbial immunoproteomes.

Indira T Kudva1, Bryan Krastins, Haiqing Sheng, Robert W Griffin, David A Sarracino, Phillip I Tarr, Carolyn J Hovde, Stephen B Calderwood, Manohar John.   

Abstract

Current methodologies for global identification of microbial proteins that elicit host humoral immune responses have several limitations and are not ideally suited for use in the postgenomic era. Here we describe a novel application of proteomics, proteomics-based expression library screening, to rapidly define microbial immunoproteomes. Proteomics-based expression library screening is broadly applicable to any cultivable, sequenced pathogen eliciting host antibody responses and hence is ideal for rapidly mining microbial proteomes for targets with diagnostic, prophylactic, and therapeutic potential. In this report, we demonstrate "proof-of-principle" by identifying 207 proteins of the Escherichia coli O157:H7 immunome in bovine reservoirs in only 3 weeks.

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Year:  2006        PMID： 16737953      PMCID： PMC2754196          DOI： 10.1074/mcp.T600013-MCP200

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN： 1535-9476            Impact factor:   5.911


  19 in total

Review 1.  Assessment of bacterial pathogenesis by analysis of gene expression in the host.

Authors:  M J Mahan; D M Heithoff; R L Sinsheimer; D A Low
Journal:  Annu Rev Genet       Date:  2000       Impact factor: 16.830

Review 2.  The ABC's (and XYZ's) of peptide sequencing.

Authors:  Hanno Steen; Matthias Mann
Journal:  Nat Rev Mol Cell Biol       Date:  2004-09       Impact factor: 94.444

3.  Protein microarray for profiling antibody responses to Yersinia pestis live vaccine.

Authors:  Bei Li; Lingxiao Jiang; Qifeng Song; Junxin Yang; Zeliang Chen; Zhaobiao Guo; Dongsheng Zhou; Zongmin Du; Yajun Song; Jin Wang; Hongxia Wang; Shouyi Yu; Jian Wang; Ruifu Yang
Journal:  Infect Immun       Date:  2005-06       Impact factor: 3.441

4.  Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome.

Authors:  Junmin Peng; Joshua E Elias; Carson C Thoreen; Larry J Licklider; Steven P Gygi
Journal:  J Proteome Res       Date:  2003 Jan-Feb       Impact factor: 4.466

5.  Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Authors:  N T Perna; G Plunkett; V Burland; B Mau; J D Glasner; D J Rose; G F Mayhew; P S Evans; J Gregor; H A Kirkpatrick; G Pósfai; J Hackett; S Klink; A Boutin; Y Shao; L Miller; E J Grotbeck; N W Davis; A Lim; E T Dimalanta; K D Potamousis; J Apodaca; T S Anantharaman; J Lin; G Yen; D C Schwartz; R A Welch; F R Blattner
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

6.  Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

Authors:  T Hayashi; K Makino; M Ohnishi; K Kurokawa; K Ishii; K Yokoyama; C G Han; E Ohtsubo; K Nakayama; T Murata; M Tanaka; T Tobe; T Iida; H Takami; T Honda; C Sasakawa; N Ogasawara; T Yasunaga; S Kuhara; T Shiba; M Hattori; H Shinagawa
Journal:  DNA Res       Date:  2001-02-28       Impact factor: 4.458

7.  Identification of in vivo expressed vaccine candidate antigens from Staphylococcus aureus.

Authors:  Hildegard Etz; Duc Bui Minh; Tamás Henics; Agnieszka Dryla; Birgit Winkler; Christine Triska; Aoife P Boyd; Johannes Söllner; Walter Schmidt; Uwe von Ahsen; Michael Buschle; Steven R Gill; James Kolonay; Hanif Khalak; Claire M Fraser; Alexander von Gabain; Eszter Nagy; Andreas Meinke
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-07       Impact factor: 11.205

8.  Decreased shedding of Escherichia coli O157:H7 by cattle following vaccination with type III secreted proteins.

Authors:  Andrew A Potter; Sandra Klashinsky; Yuling Li; Elizabeth Frey; Hugh Townsend; Dragan Rogan; Galen Erickson; Susanne Hinkley; Terry Klopfenstein; Rodney A Moxley; David R Smith; B Brett Finlay
Journal:  Vaccine       Date:  2004-01-02       Impact factor: 3.641

9.  Determination of the transcriptome of Vibrio cholerae during intraintestinal growth and midexponential phase in vitro.

Authors:  Qing Xu; Michelle Dziejman; John J Mekalanos
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-27       Impact factor: 11.205

10.  Self-assembling protein microarrays.

Authors:  Niroshan Ramachandran; Eugenie Hainsworth; Bhupinder Bhullar; Samuel Eisenstein; Benjamin Rosen; Albert Y Lau; Johannes C Walter; Joshua LaBaer
Journal:  Science       Date:  2004-07-02       Impact factor: 47.728
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  12 in total

1.  The Escherichia coli O157:H7 cattle immunoproteome includes outer membrane protein A (OmpA), a modulator of adherence to bovine rectoanal junction squamous epithelial (RSE) cells.

Authors:  Indira T Kudva; Bryan Krastins; Alfredo G Torres; Robert W Griffin; Haiqing Sheng; David A Sarracino; Carolyn J Hovde; Stephen B Calderwood; Manohar John
Journal:  Proteomics       Date:  2015-03-09       Impact factor: 3.984

2.  Characterization of anti-Salmonella enterica serotype Typhi antibody responses in bacteremic Bangladeshi patients by an immunoaffinity proteomics-based technology.

Authors:  Richelle C Charles; Alaullah Sheikh; Bryan Krastins; Jason B Harris; M Saruar Bhuiyan; Regina C LaRocque; Tanya Logvinenko; David A Sarracino; Indira T Kudva; Jana Eisenstein; Michael J Podolsky; Anuj Kalsy; W Abdullah Brooks; Albrecht Ludwig; Manohar John; Stephen B Calderwood; Firdausi Qadri; Edward T Ryan
Journal:  Clin Vaccine Immunol       Date:  2010-06-23

3.  Novel reusable animal model for comparative evaluation of in vivo growth and protein-expression of Escherichia coli O157 strains in the bovine rumen.

Authors:  Indira T Kudva; Julian Trachsel; Erika N Biernbaum; Thomas Casey
Journal:  PLoS One       Date:  2022-05-26       Impact factor: 3.752

4.  Proteomic analysis of Vibrio cholerae in human stool.

Authors:  Regina C LaRocque; Bryan Krastins; Jason B Harris; Lauren M Lebrun; Kenneth C Parker; Michael Chase; Edward T Ryan; Firdausi Qadri; David Sarracino; Stephen B Calderwood
Journal:  Infect Immun       Date:  2008-06-30       Impact factor: 3.441

5.  Adherence of non-O157 Shiga toxin-producing Escherichia coli to bovine recto-anal junction squamous epithelial cells appears to be mediated by mechanisms distinct from those used by O157.

Authors:  Indira T Kudva; Carolyn J Hovde; Manohar John
Journal:  Foodborne Pathog Dis       Date:  2013-03-19       Impact factor: 3.171

6.  Proteins other than the locus of enterocyte effacement-encoded proteins contribute to Escherichia coli O157:H7 adherence to bovine rectoanal junction stratified squamous epithelial cells.

Authors:  Indira T Kudva; Robert W Griffin; Bryan Krastins; David A Sarracino; Stephen B Calderwood; Manohar John
Journal:  BMC Microbiol       Date:  2012-06-12       Impact factor: 3.605

7.  Internalization of Escherichia coli o157:h7 by bovine rectal epithelial cells.

Authors:  Haiqing Sheng; Jing Wang; Ji Youn Lim; Christine Davitt; Scott A Minnich; Carolyn J Hovde
Journal:  Front Microbiol       Date:  2011-02-22       Impact factor: 5.640

8.  Adhesive polypeptides of Staphylococcus aureus identified using a novel secretion library technique in Escherichia coli.

Authors:  Riikka Kylväjä; Matti Kankainen; Liisa Holm; Benita Westerlund-Wikström
Journal:  BMC Microbiol       Date:  2011-05-27       Impact factor: 3.605

9.  LTQ-XL mass spectrometry proteome analysis expands the Pseudomonas aeruginosa AmpR regulon to include cyclic di-GMP phosphodiesterases and phosphoproteins, and identifies novel open reading frames.

Authors:  Hansi Kumari; Senthil K Murugapiran; Deepak Balasubramanian; Lisa Schneper; Massimo Merighi; David Sarracino; Stephen Lory; Kalai Mathee
Journal:  J Proteomics       Date:  2013-11-28       Impact factor: 4.044

10.  A novel helper phage enabling construction of genome-scale ORF-enriched phage display libraries.

Authors:  Amita Gupta; Nimisha Shrivastava; Payal Grover; Ajay Singh; Kapil Mathur; Vaishali Verma; Charanpreet Kaur; Vijay K Chaudhary
Journal:  PLoS One       Date:  2013-09-27       Impact factor: 3.240
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