Literature DB >> 16734454

Ribosomal synthesis of dehydroalanine-containing peptides.

Florian P Seebeck1, Jack W Szostak.   

Abstract

Dehydroalanine is a nonproteinogenic amino acid, but it is a component of a wide variety of natural products with therapeutic activities. Indeed, this alpha,beta-unsaturated residue is a highly versatile building block due to its rigidifying effect on peptide backbones and its electrophilicity which allows site-specific thiol ligations of peptides with small molecules or proteins. To harness such versatility in genetically encoded, combinatorial peptide libraries, we report a simple and robust method for the ribosomal synthesis of dehydroalanine-containing peptides. Selenalysine, a selenium-containing lysine analogue, was recruited as a masked dehydroalanine equivalent. This residue is efficiently incorporated by a reconstituted Escherichia coli translation system at high fidelity and efficiency despite the presence of low levels of lysine. Mild oxidative conditions were used to convert selenalysine into dehydroalanine post-translationally. Using this method, we demonstrate the preparation of polyunsaturated and highly decorated peptides. This report is an important step toward the preparation and selection of large libraries of protein-reactive compounds with potential use as novel drugs or as analytical tools.

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Year:  2006        PMID: 16734454      PMCID: PMC2572134          DOI: 10.1021/ja060966w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

1.  Cell-free translation reconstituted with purified components.

Authors:  Y Shimizu; A Inoue; Y Tomari; T Suzuki; T Yokogawa; K Nishikawa; T Ueda
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

2.  Programming peptidomimetic syntheses by translating genetic codes designed de novo.

Authors:  Anthony C Forster; Zhongping Tan; Madhavi N L Nalam; Hening Lin; Hui Qu; Virginia W Cornish; Stephen C Blacklow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-16       Impact factor: 11.205

3.  Amino acid backbone specificity of the Escherichia coli translation machinery.

Authors:  Zhongping Tan; Anthony C Forster; Stephen C Blacklow; Virginia W Cornish
Journal:  J Am Chem Soc       Date:  2004-10-13       Impact factor: 15.419

Review 4.  Biosynthesis of nonribosomal peptides1.

Authors:  Robert Finking; Mohamed A Marahiel
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 15.500

5.  Lowering the entropic barrier for binding conformationally flexible inhibitors to enzymes.

Authors:  A R Khan; J C Parrish; M E Fraser; W W Smith; P A Bartlett; M N James
Journal:  Biochemistry       Date:  1998-12-01       Impact factor: 3.162

6.  RNA-peptide fusions for the in vitro selection of peptides and proteins.

Authors:  R W Roberts; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

7.  Facile chemoselective synthesis of dehydroalanine-containing peptides.

Authors:  N M Okeley; Y Zhu; W A van Der Donk
Journal:  Org Lett       Date:  2000-11-16       Impact factor: 6.005

8.  Site-specific incorporation of (aminooxy)acetic acid into proteins.

Authors:  Brian M Eisenhauer; Sidney M Hecht
Journal:  Biochemistry       Date:  2002-09-24       Impact factor: 3.162

9.  Enhanced D-amino acid incorporation into protein by modified ribosomes.

Authors:  Larisa M Dedkova; Nour Eddine Fahmi; Serguei Y Golovine; Sidney M Hecht
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

10.  Functional proteins from a random-sequence library.

Authors:  A D Keefe; J W Szostak
Journal:  Nature       Date:  2001-04-05       Impact factor: 49.962

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  22 in total

Review 1.  Rings, radicals, and regeneration: the early years of a bioorganic laboratory.

Authors:  Wilfred A van der Donk
Journal:  J Org Chem       Date:  2006-12-22       Impact factor: 4.354

2.  mRNA display for the selection and evolution of enzymes from in vitro-translated protein libraries.

Authors:  Burckhard Seelig
Journal:  Nat Protoc       Date:  2011-03-31       Impact factor: 13.491

Review 3.  Reactive Enamines and Imines In Vivo: Lessons from the RidA Paradigm.

Authors:  Andrew J Borchert; Dustin C Ernst; Diana M Downs
Journal:  Trends Biochem Sci       Date:  2019-05-15       Impact factor: 13.807

4.  The dehydroalanine effect in the fragmentation of ions derived from polypeptides.

Authors:  Alice L Pilo; Zhou Peng; Scott A McLuckey
Journal:  J Mass Spectrom       Date:  2016-10       Impact factor: 1.982

Review 5.  Dehydroamino acids: chemical multi-tools for late-stage diversification.

Authors:  Jonathan W Bogart; Albert A Bowers
Journal:  Org Biomol Chem       Date:  2019-04-10       Impact factor: 3.876

6.  Genetically Introducing Biochemically Reactive Amino Acids Dehydroalanine and Dehydrobutyrine in Proteins.

Authors:  Bing Yang; Nanxi Wang; Paul D Schnier; Feng Zheng; He Zhu; Nicholas F Polizzi; Avinash Ittuveetil; Varma Saikam; William F DeGrado; Qian Wang; Peng G Wang; Lei Wang
Journal:  J Am Chem Soc       Date:  2019-05-03       Impact factor: 15.419

7.  Selenocysteine as a Latent Bioorthogonal Electrophilic Probe for Deubiquitylating Enzymes.

Authors:  Samuel D Whedon; Nagula Markandeya; Ambar S J B Rana; Nicholas A Senger; Caroline E Weller; Frantisek Tureček; Eric R Strieter; Champak Chatterjee
Journal:  J Am Chem Soc       Date:  2016-10-17       Impact factor: 15.419

8.  Selection of cyclic peptide aptamers to HCV IRES RNA using mRNA display.

Authors:  Alexander Litovchick; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-29       Impact factor: 11.205

9.  Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides.

Authors:  Steven R Fleming; Tessa E Bartges; Alexander A Vinogradov; Christine L Kirkpatrick; Yuki Goto; Hiroaki Suga; Leslie M Hicks; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

10.  Ribosomal synthesis of N-methyl peptides.

Authors:  Alexander O Subtelny; Matthew C T Hartman; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2008-04-11       Impact factor: 15.419

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