Literature DB >> 16730881

Kinetics of bimolecular reactions in model bilayers and biological membranes. A critical review.

Eurico Melo1, Jorge Martins.   

Abstract

The quantitative study of the probability of molecular encounters giving rise to a reaction in membranes is a challenging discipline. Model systems, model in the sense that they use model bilayers and model reactants, have been widely used for this purpose, but the methodologies employed for the analysis of the results obtained in experiments, and for experimental design, are so disparate that a concerned experimentalist has difficulty in deciding about the value of each approach. This review intends to examine the several approaches that can be found in the literature showing, when feasible, the weakness, strengths and limits of application of each of them. There is not, so far, a full experimental validation of the most promising theories for the analysis of reactions in two dimensions, what leaves open a large field for new research. The major challenge resides in the time range in which the processes take place, but the possibilities of the existing techniques for these studies are far from exhausted. We review also the attempts of several authors to quantitatively analyze the kinetics of reactions in biological membranes. Especially in this field, the recently developed microspectroscopies enclose a still unexplored potential.

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Year:  2006        PMID: 16730881     DOI: 10.1016/j.bpc.2006.05.003

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  15 in total

1.  Characterization of the motion of membrane proteins using high-speed atomic force microscopy.

Authors:  Ignacio Casuso; Jonathan Khao; Mohamed Chami; Perrine Paul-Gilloteaux; Mohamed Husain; Jean-Pierre Duneau; Henning Stahlberg; James N Sturgis; Simon Scheuring
Journal:  Nat Nanotechnol       Date:  2012-07-08       Impact factor: 39.213

2.  Fast on-rates allow short dwell time ligands to activate T cells.

Authors:  Christopher C Govern; Michelle K Paczosa; Arup K Chakraborty; Eric S Huseby
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

3.  Tyrosine-lipid peroxide adducts from radical termination: para coupling and intramolecular Diels-Alder cyclization.

Authors:  Roman Shchepin; Matias N Möller; Hye-young H Kim; Duane M Hatch; Silvina Bartesaghi; Balaraman Kalyanaraman; Rafael Radi; Ned A Porter
Journal:  J Am Chem Soc       Date:  2010-11-19       Impact factor: 15.419

4.  A biological interpretation of transient anomalous subdiffusion. II. Reaction kinetics.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2007-09-28       Impact factor: 4.033

5.  How spatial heterogeneity shapes multiscale biochemical reaction network dynamics.

Authors:  Peter Pfaffelhuber; Lea Popovic
Journal:  J R Soc Interface       Date:  2015-03-06       Impact factor: 4.118

6.  Pivotal role of P450-P450 interactions in CYP3A4 allostery: the case of α-naphthoflavone.

Authors:  Dmitri R Davydov; Nadezhda Y Davydova; Elena V Sineva; Irina Kufareva; James R Halpert
Journal:  Biochem J       Date:  2013-07-15       Impact factor: 3.857

7.  Toward a systems approach to the human cytochrome P450 ensemble: interactions between CYP2D6 and CYP2E1 and their functional consequences.

Authors:  Dmitri R Davydov; Nadezhda Y Davydova; John T Rodgers; Thomas H Rushmore; Jeffrey P Jones
Journal:  Biochem J       Date:  2017-10-10       Impact factor: 3.857

8.  Quenching of triplet state fluorophores for studying diffusion-mediated reactions in lipid membranes.

Authors:  Johan Strömqvist; Andriy Chmyrov; Sofia Johansson; August Andersson; Lena Mäler; Jerker Widengren
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

Review 9.  Electrodes modified with lipid membranes to study quinone oxidoreductases.

Authors:  Sophie A Weiss; Lars J C Jeuken
Journal:  Biochem Soc Trans       Date:  2009-08       Impact factor: 5.407

10.  Membrane promotes tBID interaction with BCL(XL).

Authors:  Ana J García-Sáez; Jonas Ries; Mar Orzáez; Enrique Pérez-Payà; Petra Schwille
Journal:  Nat Struct Mol Biol       Date:  2009-10-11       Impact factor: 15.369

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