Literature DB >> 16714105

DNA looping: the consequences and its control.

Leonor Saiz1, Jose M G Vilar.   

Abstract

The formation of DNA loops by proteins and protein complexes is ubiquitous to many fundamental cellular processes, including transcription, recombination and replication. Recently, advances have been made in understanding the properties of DNA looping in its natural context and how they propagate to cellular behavior through gene regulation. The result of connecting the molecular properties of DNA looping with cellular physiology measurements indicates that looping of DNA in vivo is much more complex and easier than predicted from current models, and reveals a wealth of previously unappreciated details.

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Year:  2006        PMID: 16714105     DOI: 10.1016/j.sbi.2006.05.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  32 in total

1.  Bending the rules of transcriptional repression: tightly looped DNA directly represses T7 RNA polymerase.

Authors:  Troy A Lionberger; Edgar Meyhöfer
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

2.  Predicting gene-regulation functions: lessons from temperate bacteriophages.

Authors:  Vladimir B Teif
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

3.  Accurate prediction of gene expression by integration of DNA sequence statistics with detailed modeling of transcription regulation.

Authors:  Jose M G Vilar
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

4.  Nucleosome-mediated cooperativity between transcription factors.

Authors:  Leonid A Mirny
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

5.  Optical Pushing: A Tool for Parallelized Biomolecule Manipulation.

Authors:  Gerrit Sitters; Niels Laurens; Emilie J de Rijk; Holger Kress; Erwin J G Peterman; Gijs J L Wuite
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

6.  Comparison of the theoretical and real-world evolutionary potential of a genetic circuit.

Authors:  M Razo-Mejia; J Q Boedicker; D Jones; A DeLuna; J B Kinney; R Phillips
Journal:  Phys Biol       Date:  2014-04-01       Impact factor: 2.583

7.  Coupling distant sites in DNA during DNA mismatch repair.

Authors:  Richard D Kolodner; Marc L Mendillo; Christopher D Putnam
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

8.  CTCF-Induced Circular DNA Complexes Observed by Atomic Force Microscopy.

Authors:  Matthew T Mawhinney; Runcong Liu; Fang Lu; Jasna Maksimoska; Kevin Damico; Ronen Marmorstein; Paul M Lieberman; Brigita Urbanc
Journal:  J Mol Biol       Date:  2018-01-31       Impact factor: 5.469

9.  DNA supercoiling: a regulatory signal for the λ repressor.

Authors:  Yue Ding; Carlo Manzo; Geraldine Fulcrand; Fenfei Leng; David Dunlap; Laura Finzi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-15       Impact factor: 11.205

10.  On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter.

Authors:  Antoine Coulon; Olivier Gandrillon; Guillaume Beslon
Journal:  BMC Syst Biol       Date:  2010-01-08
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