Literature DB >> 16714104

DNA architecture: from G to Z.

Anh Tuân Phan1, Vitaly Kuryavyi, Dinshaw J Patel.   

Abstract

G-quadruplexes and Z-DNA are two important non-B forms of DNA architecture. Results on novel structural elements, folding and unfolding kinetics, and interactions with small molecules and proteins have been reported recently for these forms. These results will enhance our understanding of the biology of these structures and provide a platform for drug design.

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Year:  2006        PMID： 16714104      PMCID： PMC4689308          DOI： 10.1016/j.sbi.2006.05.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  68 in total

1.  V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads.

Authors:  N Zhang; A Gorin; A Majumdar; A Kettani; N Chernichenko; E Skripkin; D J Patel
Journal:  J Mol Biol       Date:  2001-08-31       Impact factor: 5.469

2.  A poxvirus protein forms a complex with left-handed Z-DNA: crystal structure of a Yatapoxvirus Zalpha bound to DNA.

Authors:  Sung Chul Ha; Neratur K Lokanath; Dong Van Quyen; Chun Ai Wu; Ky Lowenhaupt; Alexander Rich; Yang-Gyun Kim; Kyeong Kyu Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-24       Impact factor: 11.205

3.  Inhibition of telomerase by G-quartet DNA structures.

Authors:  A M Zahler; J R Williamson; T R Cech; D M Prescott
Journal:  Nature       Date:  1991-04-25       Impact factor: 49.962

4.  Extension of G-quadruplex DNA by ciliate telomerase.

Authors:  Liana Oganesian; Ian K Moon; Tracy M Bryan; Michael B Jarstfer
Journal:  EMBO J       Date:  2006-03-02       Impact factor: 11.598

5.  Apoptosis related to telomere instability and cell cycle alterations in human glioma cells treated by new highly selective G-quadruplex ligands.

Authors:  Gaëlle Pennarun; Christine Granotier; Laurent R Gauthier; Dennis Gomez; Françoise Hoffschir; Eliane Mandine; Jean-François Riou; Jean-Louis Mergny; Patrick Mailliet; François D Boussin
Journal:  Oncogene       Date:  2005-04-21       Impact factor: 9.867

6.  Biological function of the vaccinia virus Z-DNA-binding protein E3L: gene transactivation and antiapoptotic activity in HeLa cells.

Authors:  Jin-Ah Kwon; Alexander Rich
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-26       Impact factor: 11.205

7.  Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter.

Authors:  Anh Tuân Phan; Vitaly Kuryavyi; Hai Yan Gaw; Dinshaw J Patel
Journal:  Nat Chem Biol       Date:  2005-07-17       Impact factor: 15.040

8.  Cross-links of quadruplex structures from human telomeric DNA by dinuclear platinum complexes show the flexibility of both structures.

Authors:  Isabelle Ourliac-Garnier; Miguel-Angel Elizondo-Riojas; Sophie Redon; Nicholas P Farrell; Sophie Bombard
Journal:  Biochemistry       Date:  2005-08-09       Impact factor: 3.162

9.  Specific interactions of distamycin with G-quadruplex DNA.

Authors:  Melanie J Cocco; L A Hanakahi; Michael D Huber; Nancy Maizels
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

10.  Structure of a quinobenzoxazine--G-quadruplex complex by REDOR NMR.

Authors:  Anil K Mehta; Yuda Shayo; Hariprasad Vankayalapati; Laurence H Hurley; Jacob Schaefer
Journal:  Biochemistry       Date:  2004-09-28       Impact factor: 3.162
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  76 in total

1.  Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool).

Authors:  R Z Cer; K H Bruce; D E Donohue; N A Temiz; U S Mudunuri; M Yi; N Volfovsky; A Bacolla; B T Luke; J R Collins; R M Stephens
Journal:  Curr Protoc Hum Genet       Date:  2012-04

2.  Heterocyclic dications as a new class of telomeric G-quadruplex targeting agents.

Authors:  Rupesh Nanjunda; Caterina Musetti; Arvind Kumar; Mohamed A Ismail; Abdelbasset A Farahat; Siming Wang; Claudia Sissi; Manlio Palumbo; David W Boykin; W David Wilson
Journal:  Curr Pharm Des       Date:  2012       Impact factor: 3.116

3.  Unusual salt-induced behaviour of guanine-rich natural DNA evidenced by dynamic light scattering.

Authors:  Massimo Zimbone; Gabriele Bonaventura; Pietro Baeri; Maria Luisa Barcellona
Journal:  Eur Biophys J       Date:  2012-02-19       Impact factor: 1.733

4.  The effect on quadruplex stability of North-nucleoside derivatives in the loops of the thrombin-binding aptamer.

Authors:  Anna Aviñó; Stefania Mazzini; Ruben Ferreira; Raimundo Gargallo; Victor E Marquez; Ramon Eritja
Journal:  Bioorg Med Chem       Date:  2012-06-09       Impact factor: 3.641

5.  Computational docking simulations of a DNA-aptamer for argininamide and related ligands.

Authors:  H Bauke Albada; Eyal Golub; Itamar Willner
Journal:  J Comput Aided Mol Des       Date:  2015-04-16       Impact factor: 3.686

6.  Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold.

Authors:  Kim Ngoc Luu; Anh Tuân Phan; Vitaly Kuryavyi; Laurent Lacroix; Dinshaw J Patel
Journal:  J Am Chem Soc       Date:  2006-08-02       Impact factor: 15.419

7.  DNA energy landscapes via calorimetric detection of microstate ensembles of metastable macrostates and triplet repeat diseases.

Authors:  Jens Völker; Horst H Klump; Kenneth J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-17       Impact factor: 11.205

8.  S region sequence, RNA polymerase II, and histone modifications create chromatin accessibility during class switch recombination.

Authors:  Lili Wang; Robert Wuerffel; Scott Feldman; Ahmed Amine Khamlichi; Amy L Kenter
Journal:  J Exp Med       Date:  2009-07-13       Impact factor: 14.307

9.  Self-association of short DNA loops through minor groove C:G:G:C tetrads.

Authors:  Júlia Viladoms; Núria Escaja; Miriam Frieden; Irene Gómez-Pinto; Enrique Pedroso; Carlos González
Journal:  Nucleic Acids Res       Date:  2009-03-24       Impact factor: 16.971

10.  Genome-wide colonization of gene regulatory elements by G4 DNA motifs.

Authors:  Zhuo Du; Yiqiang Zhao; Ning Li
Journal:  Nucleic Acids Res       Date:  2009-09-16       Impact factor: 16.971
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