Literature DB >> 16713247

The types and prevalence of alternative splice forms.

Mihaela Zavolan1, Erik van Nimwegen.   

Abstract

The finding that eukaryotic gene structures are extremely complex prompted the development of new experimental techniques for the accurate measurement of transcription start site usage and of the expression of alternative splice forms. On the computational side, analyses of large databases of splice variants revealed differences in the length, motif composition and selection pressure between constitutive and alternatively spliced exons. Such features are being incorporated into novel computational tools for gene structure prediction. The result of these investigations is a continuously improving catalogue of alternative splice forms. How the expression of these alternative splice forms is regulated remains one of the major open questions.

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Year:  2006        PMID: 16713247     DOI: 10.1016/j.sbi.2006.05.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  14 in total

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Journal:  Mol Cell Biol       Date:  2008-03-10       Impact factor: 4.272

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Authors:  Rosa Tarrío; Francisco J Ayala; Francisco Rodríguez-Trelles
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-07       Impact factor: 11.205

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4.  Mouse chromosome 17 candidate modifier genes for thrombosis.

Authors:  Qila Sa; Erika Hart; Joseph H Nadeau; Jane L Hoover-Plow
Journal:  Mamm Genome       Date:  2010-08-11       Impact factor: 2.957

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Authors:  Jungyeon Won; Elaine Gifford; Richard S Smith; Haiqing Yi; Paulo A Ferreira; Wanda L Hicks; Tiansen Li; Jürgen K Naggert; Patsy M Nishina
Journal:  Hum Mol Genet       Date:  2009-08-13       Impact factor: 6.150

6.  Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts.

Authors:  Elisa N Ferreira; Maria C R Rangel; Pedro F Galante; Jorge E de Souza; Gustavo C Molina; Sandro J de Souza; Dirce M Carraro
Journal:  BMC Genomics       Date:  2010-12-22       Impact factor: 3.969

7.  Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology.

Authors:  Holger Pillmann; Klas Hatje; Florian Odronitz; Björn Hammesfahr; Martin Kollmar
Journal:  BMC Bioinformatics       Date:  2011-06-30       Impact factor: 3.169

8.  Alternative splicing of transcription factors' genes: beyond the increase of proteome diversity.

Authors:  David Talavera; Modesto Orozco; Xavier de la Cruz
Journal:  Comp Funct Genomics       Date:  2009-07-12

9.  Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human.

Authors:  German Gaston Leparc; Robi David Mitra
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The human genomic melting map.

Authors:  Fang Liu; Eivind Tøstesen; Jostein K Sundet; Tor-Kristian Jenssen; Christoph Bock; Geir Ivar Jerstad; William G Thilly; Eivind Hovig
Journal:  PLoS Comput Biol       Date:  2007-04-11       Impact factor: 4.475

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