Literature DB >> 16711712

Bringing chemical data onto the Semantic Web.

K R Taylor1, R J Gledhill, J W Essex, J G Frey, S W Harris, D C De Roure.   

Abstract

Present chemical data storage methodologies place many restrictions on the use of the stored data. The absence of sufficient high-quality metadata prevents intelligent computer access to the data without human intervention. This creates barriers to the automation of data mining in activities such as quantitative structure-activity relationship modelling. The application of Semantic Web technologies to chemical data is shown to reduce these limitations. The use of unique identifiers and relationships (represented as uniform resource identifiers, URIs, and resource description framework, RDF) held in a triplestore provides for greater detail and flexibility in the sharing and storage of molecular structures and properties.

Entities:  

Year:  2006        PMID: 16711712     DOI: 10.1021/ci050378m

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  6 in total

1.  Many InChIs and quite some feat.

Authors:  Wendy A Warr
Journal:  J Comput Aided Mol Des       Date:  2015-06-17       Impact factor: 3.686

2.  The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web.

Authors:  Janna Hastings; Leonid Chepelev; Egon Willighagen; Nico Adams; Christoph Steinbeck; Michel Dumontier
Journal:  PLoS One       Date:  2011-10-03       Impact factor: 3.240

3.  Global analysis of small molecule binding to related protein targets.

Authors:  Felix A Kruger; John P Overington
Journal:  PLoS Comput Biol       Date:  2012-01-12       Impact factor: 4.475

4.  A survey of quantitative descriptions of molecular structure.

Authors:  Rajarshi Guha; Egon Willighagen
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

5.  LabTrove: a lightweight, web based, laboratory "blog" as a route towards a marked up record of work in a bioscience research laboratory.

Authors:  Andrew J Milsted; Jennifer R Hale; Jeremy G Frey; Cameron Neylon
Journal:  PLoS One       Date:  2013-07-23       Impact factor: 3.240

6.  Cheminformatics and the Semantic Web: adding value with linked data and enhanced provenance.

Authors:  Jeremy G Frey; Colin L Bird
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2013-01-08
  6 in total

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