Literature DB >> 16707276

Progress in in silico functional genomics: the malaria Metabolic Pathways database.

Hagai Ginsburg1.   

Abstract

Genomic, transcriptomic and proteomic data can be turned into biologically meaningful information if they are synthesized into processes. Such amalgamation has been done for the most virulent malaria parasite Plasmodium falciparum in the Metabolic Pathways database. The dialectics of construction of metabolic pathways and other biological processes using this database is presented here. Additional features, such as links to other databases and the incorporation of transcriptomic clocks, are elucidated. Comparison of Metabolic Pathways to other similar databases is analyzed.

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Year:  2006        PMID： 16707276     DOI： 10.1016/j.pt.2006.04.008

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN： 1471-4922


  50 in total

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5.  Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network.

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6.  Comparative Genomics and Systems Biology of Malaria Parasites Plasmodium.

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7.  The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites.

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8.  A combined transcriptome and proteome survey of malaria parasite liver stages.

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9.  FMM: a web server for metabolic pathway reconstruction and comparative analysis.

Authors:  Chih-Hung Chou; Wen-Chi Chang; Chih-Min Chiu; Chih-Chang Huang; Hsien-Da Huang
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10.  PlasmoDB: a functional genomic database for malaria parasites.

Authors:  Cristina Aurrecoechea; John Brestelli; Brian P Brunk; Jennifer Dommer; Steve Fischer; Bindu Gajria; Xin Gao; Alan Gingle; Greg Grant; Omar S Harb; Mark Heiges; Frank Innamorato; John Iodice; Jessica C Kissinger; Eileen Kraemer; Wei Li; John A Miller; Vishal Nayak; Cary Pennington; Deborah F Pinney; David S Roos; Chris Ross; Christian J Stoeckert; Charles Treatman; Haiming Wang
Journal:  Nucleic Acids Res       Date:  2008-10-28       Impact factor: 16.971
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