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Literature DB >> 16707004

The success (or not) of HUGO nomenclature.

Abstract

Current usage of gene nomenclature is ambiguous and impairs the efficient handling of scientific information. Therefore it is important to propose guidelines to deal with this problem. This study attempts to evaluate the success of HUGO nomenclature for human genes. The results indicate that HUGO guidelines are not supported by the scientific community.

Entities: Disease Gene Species

Mesh：

Year: 2006 PMID： 16707004 PMCID： PMC1779514 DOI： 10.1186/gb-2006-7-5-402

Source DB: PubMed Journal: Genome Biol ISSN： 1474-7596 Impact factor: 13.583

12 in total

1. A gene network for navigating the literature.

Authors: Robert Hoffmann; Alfonso Valencia
Journal: Nat Genet Date: 2004-07 Impact factor: 38.330

2. Gene name ambiguity of eukaryotic nomenclatures.

Authors: Lifeng Chen; Hongfang Liu; Carol Friedman
Journal: Bioinformatics Date: 2004-08-27 Impact factor: 6.937

3. Genew: the human gene nomenclature database.

Authors: Hester M Wain; Michael Lush; Fabrice Ducluzeau; Sue Povey
Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971

4. What's in a name?

Authors: Gregory A Petsko
Journal: Genome Biol Date: 2002-03-26 Impact factor: 13.583

5. Intestinal trefoil factor controls the expression of the adenomatous polyposis coli-catenin and the E-cadherin-catenin complexes in human colon carcinoma cells.

Authors: J A Efstathiou; M Noda; A Rowan; C Dixon; R Chinery; A Jawhari; T Hattori; N A Wright; W F Bodmer; M Pignatelli
Journal: Proc Natl Acad Sci U S A Date: 1998-03-17 Impact factor: 11.205

6. Molecular cloning of a novel C or gamma type chemokine, SCM-1.

Authors: T Yoshida; T Imai; M Kakizaki; M Nishimura; O Yoshie
Journal: FEBS Lett Date: 1995-02-27 Impact factor: 4.124

7. Cloning of ATAC, an activation-induced, chemokine-related molecule exclusively expressed in CD8+ T lymphocytes.

Authors: S Müller; B Dorner; U Korthaüer; H W Mages; M D'Apuzzo; G Senger; R A Kroczek
Journal: Eur J Immunol Date: 1995-06 Impact factor: 5.532

8. BioCreAtIvE task 1A: gene mention finding evaluation.

Authors: Alexander Yeh; Alexander Morgan; Marc Colosimo; Lynette Hirschman
Journal: BMC Bioinformatics Date: 2005-05-24 Impact factor: 3.169

9. Dual stem loops within the poliovirus internal ribosomal entry site control neurovirulence.

Authors: M Gromeier; B Bossert; M Arita; A Nomoto; E Wimmer
Journal: J Virol Date: 1999-02 Impact factor: 5.103

10. Tough mining: the challenges of searching the scientific literature.

Authors: Steven Dickman
Journal: PLoS Biol Date: 2003-11-17 Impact factor: 8.029

15 in total

Review 1. Taste receptor genes.

Authors: Alexander A Bachmanov; Gary K Beauchamp
Journal: Annu Rev Nutr Date: 2007 Impact factor: 11.848

The success (or not) of HUGO nomenclature.

1. A gene network for navigating the literature.

2. Gene name ambiguity of eukaryotic nomenclatures.

3. Genew: the human gene nomenclature database.

4. What's in a name?

5. Intestinal trefoil factor controls the expression of the adenomatous polyposis coli-catenin and the E-cadherin-catenin complexes in human colon carcinoma cells.

6. Molecular cloning of a novel C or gamma type chemokine, SCM-1.

7. Cloning of ATAC, an activation-induced, chemokine-related molecule exclusively expressed in CD8+ T lymphocytes.

8. BioCreAtIvE task 1A: gene mention finding evaluation.

9. Dual stem loops within the poliovirus internal ribosomal entry site control neurovirulence.

10. Tough mining: the challenges of searching the scientific literature.

Review 1. Taste receptor genes.

Review 2. Bioinformatics and cancer research: building bridges for translational research.

3. Moara: a Java library for extracting and normalizing gene and protein mentions.

4. aGEM: an integrative system for analyzing spatial-temporal gene-expression information.

5. pubmed2ensembl: a resource for mining the biological literature on genes.

6. The GNAT library for local and remote gene mention normalization.

7. GeneView: a comprehensive semantic search engine for PubMed.

Review 8. From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase.

9. Identification of histone modifications in biomedical text for supporting epigenomic research.

10. iHOP web services.