Literature DB >> 16705033

Evolutionary tinkering with transposable elements.

I King Jordan1.   

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Year:  2006        PMID: 16705033      PMCID: PMC1472408          DOI: 10.1073/pnas.0602656103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  13 in total

Review 1.  Perspective: transposable elements, parasitic DNA, and genome evolution.

Authors:  M G Kidwell; D R Lisch
Journal:  Evolution       Date:  2001-01       Impact factor: 3.694

2.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

3.  Initial sequencing and comparative analysis of the mouse genome.

Authors:  Robert H Waterston; Kerstin Lindblad-Toh; Ewan Birney; Jane Rogers; Josep F Abril; Pankaj Agarwal; Richa Agarwala; Rachel Ainscough; Marina Alexandersson; Peter An; Stylianos E Antonarakis; John Attwood; Robert Baertsch; Jonathon Bailey; Karen Barlow; Stephan Beck; Eric Berry; Bruce Birren; Toby Bloom; Peer Bork; Marc Botcherby; Nicolas Bray; Michael R Brent; Daniel G Brown; Stephen D Brown; Carol Bult; John Burton; Jonathan Butler; Robert D Campbell; Piero Carninci; Simon Cawley; Francesca Chiaromonte; Asif T Chinwalla; Deanna M Church; Michele Clamp; Christopher Clee; Francis S Collins; Lisa L Cook; Richard R Copley; Alan Coulson; Olivier Couronne; James Cuff; Val Curwen; Tim Cutts; Mark Daly; Robert David; Joy Davies; Kimberly D Delehaunty; Justin Deri; Emmanouil T Dermitzakis; Colin Dewey; Nicholas J Dickens; Mark Diekhans; Sheila Dodge; Inna Dubchak; Diane M Dunn; Sean R Eddy; Laura Elnitski; Richard D Emes; Pallavi Eswara; Eduardo Eyras; Adam Felsenfeld; Ginger A Fewell; Paul Flicek; Karen Foley; Wayne N Frankel; Lucinda A Fulton; Robert S Fulton; Terrence S Furey; Diane Gage; Richard A Gibbs; Gustavo Glusman; Sante Gnerre; Nick Goldman; Leo Goodstadt; Darren Grafham; Tina A Graves; Eric D Green; Simon Gregory; Roderic Guigó; Mark Guyer; Ross C Hardison; David Haussler; Yoshihide Hayashizaki; LaDeana W Hillier; Angela Hinrichs; Wratko Hlavina; Timothy Holzer; Fan Hsu; Axin Hua; Tim Hubbard; Adrienne Hunt; Ian Jackson; David B Jaffe; L Steven Johnson; Matthew Jones; Thomas A Jones; Ann Joy; Michael Kamal; Elinor K Karlsson; Donna Karolchik; Arkadiusz Kasprzyk; Jun Kawai; Evan Keibler; Cristyn Kells; W James Kent; Andrew Kirby; Diana L Kolbe; Ian Korf; Raju S Kucherlapati; Edward J Kulbokas; David Kulp; Tom Landers; J P Leger; Steven Leonard; Ivica Letunic; Rosie Levine; Jia Li; Ming Li; Christine Lloyd; Susan Lucas; Bin Ma; Donna R Maglott; Elaine R Mardis; Lucy Matthews; Evan Mauceli; John H Mayer; Megan McCarthy; W Richard McCombie; Stuart McLaren; Kirsten McLay; John D McPherson; Jim Meldrim; Beverley Meredith; Jill P Mesirov; Webb Miller; Tracie L Miner; Emmanuel Mongin; Kate T Montgomery; Michael Morgan; Richard Mott; James C Mullikin; Donna M Muzny; William E Nash; Joanne O Nelson; Michael N Nhan; Robert Nicol; Zemin Ning; Chad Nusbaum; Michael J O'Connor; Yasushi Okazaki; Karen Oliver; Emma Overton-Larty; Lior Pachter; Genís Parra; Kymberlie H Pepin; Jane Peterson; Pavel Pevzner; Robert Plumb; Craig S Pohl; Alex Poliakov; Tracy C Ponce; Chris P Ponting; Simon Potter; Michael Quail; Alexandre Reymond; Bruce A Roe; Krishna M Roskin; Edward M Rubin; Alistair G Rust; Ralph Santos; Victor Sapojnikov; Brian Schultz; Jörg Schultz; Matthias S Schwartz; Scott Schwartz; Carol Scott; Steven Seaman; Steve Searle; Ted Sharpe; Andrew Sheridan; Ratna Shownkeen; Sarah Sims; Jonathan B Singer; Guy Slater; Arian Smit; Douglas R Smith; Brian Spencer; Arne Stabenau; Nicole Stange-Thomann; Charles Sugnet; Mikita Suyama; Glenn Tesler; Johanna Thompson; David Torrents; Evanne Trevaskis; John Tromp; Catherine Ucla; Abel Ureta-Vidal; Jade P Vinson; Andrew C Von Niederhausern; Claire M Wade; Melanie Wall; Ryan J Weber; Robert B Weiss; Michael C Wendl; Anthony P West; Kris Wetterstrand; Raymond Wheeler; Simon Whelan; Jamey Wierzbowski; David Willey; Sophie Williams; Richard K Wilson; Eitan Winter; Kim C Worley; Dudley Wyman; Shan Yang; Shiaw-Pyng Yang; Evgeny M Zdobnov; Michael C Zody; Eric S Lander
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

4.  Proteins. One thousand families for the molecular biologist.

Authors:  C Chothia
Journal:  Nature       Date:  1992-06-18       Impact factor: 49.962

5.  Birth of a chimeric primate gene by capture of the transposase gene from a mobile element.

Authors:  Richard Cordaux; Swalpa Udit; Mark A Batzer; Cédric Feschotte
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-03       Impact factor: 11.205

6.  Evolution and tinkering.

Authors:  F Jacob
Journal:  Science       Date:  1977-06-10       Impact factor: 47.728

7.  Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty.

Authors:  R J Britten; E H Davidson
Journal:  Q Rev Biol       Date:  1971-06       Impact factor: 4.875

8.  Selfish genes, the phenotype paradigm and genome evolution.

Authors:  W F Doolittle; C Sapienza
Journal:  Nature       Date:  1980-04-17       Impact factor: 49.962

Review 9.  Interspersed repeats and other mementos of transposable elements in mammalian genomes.

Authors:  A F Smit
Journal:  Curr Opin Genet Dev       Date:  1999-12       Impact factor: 5.578

10.  P-element homologous sequences are tandemly repeated in the genome of Drosophila guanche.

Authors:  W J Miller; S Hagemann; E Reiter; W Pinsker
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

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  11 in total

1.  Rewiring of posttranscriptional RNA regulons: Puf4p in fungi as an example.

Authors:  Huifeng Jiang; Xiaoxian Guo; Lin Xu; Zhenglong Gu
Journal:  Mol Biol Evol       Date:  2012-03-21       Impact factor: 16.240

2.  Analysis of genes associated with retrotransposons in the rice genome.

Authors:  Nicholas Krom; Jill Recla; Wusirika Ramakrishna
Journal:  Genetica       Date:  2007-12-09       Impact factor: 1.082

3.  Chk1 phosphorylation of Metnase enhances DNA repair but inhibits replication fork restart.

Authors:  R Hromas; E A Williamson; S Fnu; Y-J Lee; S-J Park; B D Beck; J-S You; A Leitao; A Laitao; J A Nickoloff; S-H Lee
Journal:  Oncogene       Date:  2012-01-09       Impact factor: 9.867

4.  Regulation of Metnase's TIR binding activity by its binding partner, Pso4.

Authors:  Brian D Beck; Sung S Lee; Robert Hromas; Suk-Hee Lee
Journal:  Arch Biochem Biophys       Date:  2010-04-20       Impact factor: 4.013

5.  Targeting the transposase domain of the DNA repair component Metnase to enhance chemotherapy.

Authors:  Elizabeth A Williamson; Leah Damiani; Andrei Leitao; Chelin Hu; Helen Hathaway; Tudor Oprea; Larry Sklar; Montaser Shaheen; Julie Bauman; Wei Wang; Jac A Nickoloff; Suk-Hee Lee; Robert Hromas
Journal:  Cancer Res       Date:  2012-10-22       Impact factor: 12.701

6.  Biochemical characterization of a SET and transposase fusion protein, Metnase: its DNA binding and DNA cleavage activity.

Authors:  Yaritzabel Roman; Masahiko Oshige; Young-Ju Lee; Kristie Goodwin; Millie M Georgiadis; Robert A Hromas; Suk-Hee Lee
Journal:  Biochemistry       Date:  2007-09-18       Impact factor: 3.162

7.  Human Pso4 is a metnase (SETMAR)-binding partner that regulates metnase function in DNA repair.

Authors:  Brian D Beck; Su-Jung Park; Young-Ju Lee; Yaritzabel Roman; Robert A Hromas; Suk-Hee Lee
Journal:  J Biol Chem       Date:  2008-02-08       Impact factor: 5.157

8.  Burst expansion, distribution and diversification of MITEs in the silkworm genome.

Authors:  Min-Jin Han; Yi-Hong Shen; Ying-Hui Gao; Li-Yong Chen; Zhong-Huai Xiang; Ze Zhang
Journal:  BMC Genomics       Date:  2010-09-27       Impact factor: 3.969

9.  Tc1-like transposable elements in plant genomes.

Authors:  Yuan Liu; Guojun Yang
Journal:  Mob DNA       Date:  2014-06-03

10.  Enterobacterial small mobile sequences carry open reading frames and are found intragenically--evolutionary implications for formation of new peptides.

Authors:  Nicholas Delihas
Journal:  Gene Regul Syst Bio       Date:  2007-10-16
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