Literature DB >> 16704342

The structural and functional role of RNA in icosahedral virus assembly.

Anette Schneemann1.   

Abstract

Despite tremendous advances in high-resolution structure determination of virus particles, the organization of encapsidated genomes and their role during assembly are poorly understood. This article summarizes recent insights from structural, biochemical, and genetic analyses of icosahedral viruses that contain single-stranded, positive-sense RNA genomes. X-ray crystallography of several viruses in this category has provided tantalizing glimpses of portions of the packaged nucleic acid, contributing crucial information on how the genome might be folded within the virion. This information combined with theoretical considerations and data from molecular approaches suggests mechanisms by which coat proteins interact with genomic RNA to shape it into a conformation that is compatible with the geometry of the virion. It appears that RNA, in addition to its function as a repository for genetic information, plays an important structural role during assembly and can on occasion override the ability of the coat protein to form a particle with defined icosahedral symmetry.

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Year:  2006        PMID: 16704342     DOI: 10.1146/annurev.micro.60.080805.142304

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  66 in total

1.  Visualizing large RNA molecules in solution.

Authors:  Ajaykumar Gopal; Z Hong Zhou; Charles M Knobler; William M Gelbart
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

2.  Langevin dynamics simulation of polymer-assisted virus-like assembly.

Authors:  J P Mahalik; M Muthukumar
Journal:  J Chem Phys       Date:  2012-04-07       Impact factor: 3.488

3.  Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA.

Authors:  Samuel Bleckley; Susan J Schroeder
Journal:  RNA       Date:  2012-05-29       Impact factor: 4.942

4.  The T=1 capsid protein of Penicillium chrysogenum virus is formed by a repeated helix-rich core indicative of gene duplication.

Authors:  Daniel Luque; José M González; Damiá Garriga; Said A Ghabrial; Wendy M Havens; Benes Trus; Nuria Verdaguer; José L Carrascosa; José R Castón
Journal:  J Virol       Date:  2010-05-12       Impact factor: 5.103

Review 5.  Nucleic acid packaging in viruses.

Authors:  Jeffrey A Speir; John E Johnson
Journal:  Curr Opin Struct Biol       Date:  2012-01-23       Impact factor: 6.809

6.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

Review 7.  Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships.

Authors:  Susan J Schroeder
Journal:  J Virol       Date:  2009-04-15       Impact factor: 5.103

8.  Uncoating of common cold virus is preceded by RNA switching as determined by X-ray and cryo-EM analyses of the subviral A-particle.

Authors:  Angela Pickl-Herk; Daniel Luque; Laia Vives-Adrián; Jordi Querol-Audí; Damià Garriga; Benes L Trus; Nuria Verdaguer; Dieter Blaas; José R Castón
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-25       Impact factor: 11.205

9.  Evidence that viral RNAs have evolved for efficient, two-stage packaging.

Authors:  Alexander Borodavka; Roman Tuma; Peter G Stockley
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

10.  Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size.

Authors:  Yufang Hu; Roya Zandi; Adriana Anavitarte; Charles M Knobler; William M Gelbart
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

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