Literature DB >> 16697908

The causes of protein evolutionary rate variation.

James O McInerney1.   

Abstract

The rate of protein evolution varies more than 1000-fold and, for the past 30 years, it was thought that the rate was determined by protein function. Drummond and co-workers have now shown that a single factor underlying mRNA expression, protein abundance and synonymous codon usage is the chief causal agent of protein evolutionary rate in yeast. It will be interesting to see whether this is shown to be a universal rule for all biological systems.

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Year:  2006        PMID: 16697908     DOI: 10.1016/j.tree.2006.03.008

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  25 in total

1.  Universal distribution of protein evolution rates as a consequence of protein folding physics.

Authors:  Alexander E Lobkovsky; Yuri I Wolf; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

2.  Evolutionary aspects of functional and pseudogene members of the phytochrome gene family in Scots pine.

Authors:  Maria Rosario García-Gil
Journal:  J Mol Evol       Date:  2008-07-29       Impact factor: 2.395

3.  Darwinian evolution in the light of genomics.

Authors:  Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2009-02-12       Impact factor: 16.971

4.  Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins.

Authors:  Claire C Morgan; Noeleen B Loughran; Thomas A Walsh; Alan J Harrison; Mary J O'Connell
Journal:  BMC Evol Biol       Date:  2010-02-11       Impact factor: 3.260

5.  Improving genome-wide scans of positive selection by using protein isoforms of similar length.

Authors:  José Luis Villanueva-Cañas; Steve Laurie; M Mar Albà
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

6.  Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network.

Authors:  David Alvarez-Ponce; Mario A Fares
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

7.  The relationship between the hierarchical position of proteins in the human signal transduction network and their rate of evolution.

Authors:  David Alvarez-Ponce
Journal:  BMC Evol Biol       Date:  2012-09-28       Impact factor: 3.260

8.  Integrated assessment of genomic correlates of protein evolutionary rate.

Authors:  Yu Xia; Eric A Franzosa; Mark B Gerstein
Journal:  PLoS Comput Biol       Date:  2009-06-12       Impact factor: 4.475

9.  Evolutionary rate patterns of the Gibberellin pathway genes.

Authors:  Yan-hua Yang; Fu-min Zhang; Song Ge
Journal:  BMC Evol Biol       Date:  2009-08-18       Impact factor: 3.260

10.  Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny.

Authors:  Shi-Hui Niu; Zhe-Xin Li; Hu-Wei Yuan; Xiao-Yang Chen; Yue Li; Wei Li
Journal:  BMC Genomics       Date:  2013-04-18       Impact factor: 3.969

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