Literature DB >> 16697070

Coping with the quantitative genomics 'elephant': the correlation between the gene dispensability and evolution rate.

Yuri I Wolf1.   

Abstract

Early studies suggested that proteins with a greater contribution to the fitness of an organism evolve more slowly than less 'important' proteins. Recent articles by two research groups highlight the long-standing controversy about the genome-wide relationships between the measures of evolution rate, protein abundance and the fitness effect of gene disruption. These studies highlight the need for truly multidimensional approaches to the issues of quantitative genomics.

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Year:  2006        PMID: 16697070     DOI: 10.1016/j.tig.2006.04.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  12 in total

1.  Conserved proteins are fragile.

Authors:  Raquel Assis; Alexey S Kondrashov
Journal:  Mol Biol Evol       Date:  2013-11-07       Impact factor: 16.240

2.  Systemic factors dominate mammal protein evolution.

Authors:  Alexander E Vinogradov
Journal:  Proc Biol Sci       Date:  2010-01-06       Impact factor: 5.349

3.  Evolution of Cis-Regulatory Elements and Regulatory Networks in Duplicated Genes of Arabidopsis.

Authors:  Andrej A Arsovski; Julian Pradinuk; Xu Qiu Guo; Sishuo Wang; Keith L Adams
Journal:  Plant Physiol       Date:  2015-10-16       Impact factor: 8.340

4.  Universal distribution of mutational effects on protein stability, uncoupling of protein robustness from sequence evolution and distinct evolutionary modes of prokaryotic and eukaryotic proteins.

Authors:  Guilhem Faure; Eugene V Koonin
Journal:  Phys Biol       Date:  2015-04-30       Impact factor: 2.583

5.  Relative contributions of intrinsic structural-functional constraints and translation rate to the evolution of protein-coding genes.

Authors:  Yuri I Wolf; Irina V Gopich; David J Lipman; Eugene V Koonin
Journal:  Genome Biol Evol       Date:  2010-07-12       Impact factor: 3.416

6.  The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages.

Authors:  Yuri I Wolf; Pavel S Novichkov; Georgy P Karev; Eugene V Koonin; David J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-07       Impact factor: 11.205

7.  Evolutionary Conservation of Bacterial Essential Metabolic Genes across All Bacterial Culture Media.

Authors:  Oren Ish-Am; David M Kristensen; Eytan Ruppin
Journal:  PLoS One       Date:  2015-04-20       Impact factor: 3.240

8.  Why is the correlation between gene importance and gene evolutionary rate so weak?

Authors:  Zhi Wang; Jianzhi Zhang
Journal:  PLoS Genet       Date:  2009-01-09       Impact factor: 5.917

9.  Evolutionary history of human disease genes reveals phenotypic connections and comorbidity among genetic diseases.

Authors:  Solip Park; Jae-Seong Yang; Jinho Kim; Young-Eun Shin; Jihye Hwang; Juyong Park; Sung Key Jang; Sanguk Kim
Journal:  Sci Rep       Date:  2012-10-22       Impact factor: 4.379

10.  Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

Authors:  Maxim Y Wolf; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2008-10-07       Impact factor: 4.540

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