Literature DB >> 16691480

Zooming in on ATP hydrolysis in F1.

Markus Dittrich1, Klaus Schulten.   

Abstract

We summarize our current view of the reaction mechanism in F(1)-ATPase as it has emerged from experiment, theory, and computational studies over the last several years. ATP catalysis in the catalytic binding pockets of F(1) takes place without the release of any significant free energy and is efficiently driven by the combined action of two water molecules utilizing a so-called protein-relay mechanism. The chemical reaction itself is controlled by the spatial position of a key arginine residue.

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Year:  2005        PMID: 16691480      PMCID: PMC1509602          DOI: 10.1007/s10863-005-9487-7

Source DB:  PubMed          Journal:  J Bioenerg Biomembr        ISSN: 0145-479X            Impact factor:   2.945


  11 in total

Review 1.  Reverse engineering a protein: the mechanochemistry of ATP synthase.

Authors:  G Oster; H Wang
Journal:  Biochim Biophys Acta       Date:  2000-05-31

2.  Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Authors:  Katsuya Shimabukuro; Ryohei Yasuda; Eiro Muneyuki; Kiyotaka Y Hara; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

3.  Converting conformational changes to electrostatic energy in molecular motors: The energetics of ATP synthase.

Authors:  Marek Strajbl; Avital Shurki; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

4.  Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation.

Authors:  Takayuki Nishizaka; Kazuhiro Oiwa; Hiroyuki Noji; Shigeki Kimura; Eiro Muneyuki; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Nat Struct Mol Biol       Date:  2004-01-18       Impact factor: 15.369

5.  The pre-hydrolysis state of p21(ras) in complex with GTP: new insights into the role of water molecules in the GTP hydrolysis reaction of ras-like proteins.

Authors:  A J Scheidig; C Burmester; R S Goody
Journal:  Structure       Date:  1999-11-15       Impact factor: 5.006

6.  ATP-driven rotation of the gamma subunit in F(1)-ATPase.

Authors:  J Weber; S Nadanaciva; A E Senior
Journal:  FEBS Lett       Date:  2000-10-13       Impact factor: 4.124

7.  Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase.

Authors:  Rainer A Böckmann; Helmut Grubmüller
Journal:  Nat Struct Biol       Date:  2002-03

8.  Role of betaAsn-243 in the phosphate-binding subdomain of catalytic sites of Escherichia coli F(1)-ATPase.

Authors:  Zulfiqar Ahmad; Alan E Senior
Journal:  J Biol Chem       Date:  2004-08-20       Impact factor: 5.157

9.  ATP hydrolysis in the betaTP and betaDP catalytic sites of F1-ATPase.

Authors:  Markus Dittrich; Shigehiko Hayashi; Klaus Schulten
Journal:  Biophys J       Date:  2004-08-17       Impact factor: 4.033

10.  On the mechanism of ATP hydrolysis in F1-ATPase.

Authors:  Markus Dittrich; Shigehiko Hayashi; Klaus Schulten
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

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  8 in total

1.  Computational delineation of the catalytic step of a high-fidelity DNA polymerase.

Authors:  Ravindra Venkatramani; Ravi Radhakrishnan
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

2.  Redox regulation of mitochondrial ATP synthase: implications for cardiac resynchronization therapy.

Authors:  Sheng-Bing Wang; D Brian Foster; Jasma Rucker; Brian O'Rourke; David A Kass; Jennifer E Van Eyk
Journal:  Circ Res       Date:  2011-08-04       Impact factor: 17.367

3.  ATP hydrolysis in Eg5 kinesin involves a catalytic two-water mechanism.

Authors:  Courtney L Parke; Edward J Wojcik; Sunyoung Kim; David K Worthylake
Journal:  J Biol Chem       Date:  2009-12-15       Impact factor: 5.157

4.  Quantum and classical dynamics simulations of ATP hydrolysis in solution.

Authors:  Christopher B Harrison; Klaus Schulten
Journal:  J Chem Theory Comput       Date:  2012-05-21       Impact factor: 6.006

Review 5.  Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase.

Authors:  Wolfgang Junge; Hendrik Sielaff; Siegfried Engelbrecht
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

6.  Chemomechanical Coupling in Hexameric Protein-Protein Interfaces Harnesses Energy within V-Type ATPases.

Authors:  Abhishek Singharoy; Christophe Chipot; Mahmoud Moradi; Klaus Schulten
Journal:  J Am Chem Soc       Date:  2016-12-23       Impact factor: 15.419

7.  Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA.

Authors:  Mark Del Campo; Alan M Lambowitz
Journal:  Mol Cell       Date:  2009-09-11       Impact factor: 17.970

8.  A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.

Authors:  Jan Marten Schmidt; Ran Yang; Ashish Kumar; Olivia Hunker; Jan Seebacher; Franziska Bleichert
Journal:  Nat Commun       Date:  2022-02-25       Impact factor: 14.919

  8 in total

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