Literature DB >> 16689957

On plotting species abundance distributions.

John S Gray1, Anders Bjørgesaeter, Karl I Ugland.   

Abstract

1. There has been a revival of interest in species abundance distribution (SAD) models, stimulated by the claim that the log-normal distribution gave an underestimate of the observed numbers of rare species in species-rich assemblages. This led to the development of the neutral Zero Sum Multinomial distribution (ZSM) to better fit the observed data. 2. Yet plots of SADs, purportedly of the same data, showed differences in frequencies of species and of statistical fits to the ZSM and log-normal models due to the use of different binning methods. 3. We plot six different binning methods for the Barro Colorado Island (BCI) tropical tree data. The appearances of the curves are very different for the different binning methods. Consequently, the fits to different models may vary depending on the binning system used. 4. There is no agreed binning method for SAD plots. Our analysis suggests that a simple doubling of the number of individuals per species in each bin is perhaps the most practical one for illustrative purposes. Alternatively rank-abundance plots should be used. 5. For fitting and testing models exact methods have been developed and application of these does not require binning of data. Errors are introduced unnecessarily if data are binned before testing goodness-of-fit to models.

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Year:  2006        PMID: 16689957     DOI: 10.1111/j.1365-2656.2006.01095.x

Source DB:  PubMed          Journal:  J Anim Ecol        ISSN: 0021-8790            Impact factor:   5.091


  11 in total

1.  Emergent neutrality leads to multimodal species abundance distributions.

Authors:  Remi Vergnon; Egbert H van Nes; Marten Scheffer
Journal:  Nat Commun       Date:  2012-02-07       Impact factor: 14.919

2.  Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes.

Authors:  Patricio Jeraldo; Maksim Sipos; Nicholas Chia; Jennifer M Brulc; A Singh Dhillon; Michael E Konkel; Charles L Larson; Karen E Nelson; Ani Qu; Lawrence B Schook; Fang Yang; Bryan A White; Nigel Goldenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

3.  Linking species abundance distributions and body size in monogenean communities.

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Journal:  Parasitol Res       Date:  2008-06       Impact factor: 2.289

4.  Mito-nuclear selection induces a trade-off between species ecological dominance and evolutionary lifespan.

Authors:  Débora Princepe; Marcus A M de Aguiar; Joshua B Plotkin
Journal:  Nat Ecol Evol       Date:  2022-10-10       Impact factor: 19.100

5.  Global abundance estimates for 9,700 bird species.

Authors:  Corey T Callaghan; Shinichi Nakagawa; William K Cornwell
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

6.  The spatial limitations of current neutral models of biodiversity.

Authors:  Rampal S Etienne; James Rosindell
Journal:  PLoS One       Date:  2011-03-14       Impact factor: 3.240

Review 7.  Neutral theory and the species abundance distribution: recent developments and prospects for unifying niche and neutral perspectives.

Authors:  Thomas J Matthews; Robert J Whittaker
Journal:  Ecol Evol       Date:  2014-05-02       Impact factor: 2.912

8.  The Point Count Transect Method for Estimates of Biodiversity on Coral Reefs: Improving the Sampling of Rare Species.

Authors:  T Edward Roberts; Thomas C Bridge; M Julian Caley; Andrew H Baird
Journal:  PLoS One       Date:  2016-03-24       Impact factor: 3.240

9.  Cryptotermes brevis (Isoptera: Kalotermitidae) in the Azores: lessons after 2 yr of monitoring in the Archipelago.

Authors:  Paulo A V Borges; Orlando Guerreiro; Maria T Ferreira; Annabella Borges; Filomena Ferreira; Nuno Bicudo; Lina Nunes; Rita S Marcos; Ana M Arroz; Rudolf H Scheffrahn; Timothy G Myles
Journal:  J Insect Sci       Date:  2014-01-01       Impact factor: 1.857

10.  Evidence from GC-TRFLP that bacterial communities in soil are lognormally distributed.

Authors:  James R Doroghazi; Daniel H Buckley
Journal:  PLoS One       Date:  2008-08-06       Impact factor: 3.240

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