Literature DB >> 16685911

Graph embedding to improve supervised classification and novel class detection: application to prostate cancer.

Anant Madabhushi1, Jianbo Shi, Mark Rosen, John E Tomaszeweski, Michael D Feldman.   

Abstract

Recently there has been a great deal of interest in algorithms for constructing low-dimensional feature-space embeddings of high dimensional data sets in order to visualize inter- and intra-class relationships. In this paper we present a novel application of graph embedding in improving the accuracy of supervised classification schemes, especially in cases where object class labels cannot be reliably ascertained. By refining the initial training set of class labels we seek to improve the prior class distributions and thus classification accuracy. We also present a novel way of visualizing the class embeddings which makes it easy to appreciate inter-class relationships and to infer the presence of new classes which were not part of the original classification. We demonstrate the utility of the method in detecting prostatic adenocarcinoma from high-resolution MRI.

Entities:  

Mesh:

Year:  2005        PMID: 16685911     DOI: 10.1007/11566465_90

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  7 in total

Review 1.  Diagnostic pathology and laboratory medicine in the age of "omics": a paper from the 2006 William Beaumont Hospital Symposium on Molecular Pathology.

Authors:  William G Finn
Journal:  J Mol Diagn       Date:  2007-07-25       Impact factor: 5.568

2.  Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies.

Authors:  George Lee; Carlos Rodriguez; Anant Madabhushi
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2008 Jul-Sep       Impact factor: 3.710

3.  A Deep Convolutional Neural Network for segmenting and classifying epithelial and stromal regions in histopathological images.

Authors:  Jun Xu; Xiaofei Luo; Guanhao Wang; Hannah Gilmore; Anant Madabhushi
Journal:  Neurocomputing       Date:  2016-02-17       Impact factor: 5.719

4.  A hierarchical spectral clustering and nonlinear dimensionality reduction scheme for detection of prostate cancer from magnetic resonance spectroscopy (MRS).

Authors:  Pallavi Tiwari; Mark Rosen; Anant Madabhushi
Journal:  Med Phys       Date:  2009-09       Impact factor: 4.071

5.  A hierarchical unsupervised spectral clustering scheme for detection of prostate cancer from magnetic resonance spectroscopy (MRS).

Authors:  Pallavi Tiwari; Anant Madabhushi; Mark Rosen
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

6.  Consensus embedding: theory, algorithms and application to segmentation and classification of biomedical data.

Authors:  Satish Viswanath; Anant Madabhushi
Journal:  BMC Bioinformatics       Date:  2012-02-08       Impact factor: 3.169

7.  Adaptive Dimensionality Reduction with Semi-Supervision (AdDReSS): Classifying Multi-Attribute Biomedical Data.

Authors:  George Lee; David Edmundo Romo Bucheli; Anant Madabhushi
Journal:  PLoS One       Date:  2016-07-15       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.