Literature DB >> 16677303

The DNA-remodelling activity of DnaD is the sum of oligomerization and DNA-binding activities on separate domains.

Maria J V M Carneiro1, Wenke Zhang, Charikleia Ioannou, David J Scott, Stephanie Allen, Clive J Roberts, Panos Soultanas.   

Abstract

The Bacillus subtilis DnaD protein is an essential protein that has been implicated in the primosomal step of DNA replication, and recently in global DNA remodelling. Here we show that DnaD consists of two domains with distinct activities; an N-terminal domain (Nd) with oligomerization activity, and a C-terminal domain (Cd) with DNA-binding activity and a second DNA-induced oligomerization activity. Although Cd can bind to DNA and form large nucleoprotein complexes, it does not exhibit global DNA-remodelling activity. The presence of separate Nd does not restore this activity. Our data suggest that the global DNA-remodelling activity of DnaD is the sum of three separate oligomerization and DNA-binding activities residing on two distinct but linked domains.

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Year:  2006        PMID: 16677303      PMCID: PMC3035175          DOI: 10.1111/j.1365-2958.2006.05152.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  15 in total

1.  The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors:  R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication.

Authors:  D Ishigo-Oka; N Ogasawara; S Moriya
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

3.  A two-protein strategy for the functional loading of a cellular replicative DNA helicase.

Authors:  Marion Velten; Stephen McGovern; Stéphanie Marsin; S Dusko Ehrlich; Philippe Noirot; Patrice Polard
Journal:  Mol Cell       Date:  2003-04       Impact factor: 17.970

4.  Identification of temperature-sensitive dnaD mutants of Staphylococcus aureus that are defective in chromosomal DNA replication.

Authors:  Y Li; K Kurokawa; M Matsuo; N Fukuhara; K Murakami; K Sekimizu
Journal:  Mol Genet Genomics       Date:  2004-03-24       Impact factor: 3.291

5.  Nucleotide sequence of Bacillus subtilis dnaB: a gene essential for DNA replication initiation and membrane attachment.

Authors:  T Hoshino; T McKenzie; S Schmidt; T Tanaka; N Sueoka
Journal:  Proc Natl Acad Sci U S A       Date:  1987-02       Impact factor: 11.205

6.  Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

Authors:  P Schuck
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

7.  Early steps of Bacillus subtilis primosome assembly.

Authors:  S Marsin; S McGovern; S D Ehrlich; C Bruand; P Polard
Journal:  J Biol Chem       Date:  2001-12-07       Impact factor: 5.157

8.  Control of DNA replication initiation by recruitment of an essential initiation protein to the membrane of Bacillus subtilis.

Authors:  Megan E Rokop; Jennifer M Auchtung; Alan D Grossman
Journal:  Mol Microbiol       Date:  2004-06       Impact factor: 3.501

9.  The Bacillus subtilis DnaD protein: a putative link between DNA remodeling and initiation of DNA replication.

Authors:  Ian J Turner; David J Scott; Stephanie Allen; Clive J Roberts; Panos Soultanas
Journal:  FEBS Lett       Date:  2004-11-19       Impact factor: 4.124

10.  A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus.

Authors:  P Soultanas
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

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  20 in total

1.  Primosomal proteins DnaD and DnaB are recruited to chromosomal regions bound by DnaA in Bacillus subtilis.

Authors:  Wiep Klaas Smits; Houra Merrikh; Carla Yaneth Bonilla; Alan D Grossman
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

2.  DNA replication initiation in Bacillus subtilis: structural and functional characterization of the essential DnaA-DnaD interaction.

Authors:  Eleyna Martin; Huw E L Williams; Matthaios Pitoulias; Daniel Stevens; Charles Winterhalter; Timothy D Craggs; Heath Murray; Mark S Searle; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

Review 3.  Biophysical characterization of DNA binding from single molecule force measurements.

Authors:  Kathy R Chaurasiya; Thayaparan Paramanathan; Micah J McCauley; Mark C Williams
Journal:  Phys Life Rev       Date:  2010-06-04       Impact factor: 11.025

4.  Cryptic protein interactions regulate DNA replication initiation.

Authors:  Lindsay A Matthews; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2018-10-21       Impact factor: 3.501

5.  Structure of the N-terminal oligomerization domain of DnaD reveals a unique tetramerization motif and provides insights into scaffold formation.

Authors:  S Schneider; W Zhang; P Soultanas; M Paoli
Journal:  J Mol Biol       Date:  2007-12-28       Impact factor: 5.469

6.  When simple sequence comparison fails: the cryptic case of the shared domains of the bacterial replication initiation proteins DnaB and DnaD.

Authors:  Farhat Y Marston; William H Grainger; Wiep Klaas Smits; Nicholas H Hopcroft; Matthew Green; Andrea M Hounslow; Alan D Grossman; C Jeremy Craven; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2010-06-28       Impact factor: 16.971

7.  Single-molecule atomic force spectroscopy reveals that DnaD forms scaffolds and enhances duplex melting.

Authors:  Wenke Zhang; Cristina Machón; Alberto Orta; Nicola Phillips; Clive J Roberts; Stephanie Allen; Panos Soultanas
Journal:  J Mol Biol       Date:  2008-02-02       Impact factor: 5.469

8.  Intragenic and extragenic suppressors of temperature sensitive mutations in the replication initiation genes dnaD and dnaB of Bacillus subtilis.

Authors:  Megan E Rokop; Alan D Grossman
Journal:  PLoS One       Date:  2009-08-26       Impact factor: 3.240

9.  The cyanobacterial cell division factor Ftn6 contains an N-terminal DnaD-like domain.

Authors:  Martial Marbouty; Cyril Saguez; Franck Chauvat
Journal:  BMC Struct Biol       Date:  2009-08-21

10.  DnaB proteolysis in vivo regulates oligomerization and its localization at oriC in Bacillus subtilis.

Authors:  William H Grainger; Cristina Machón; David J Scott; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2010-01-13       Impact factor: 16.971

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