Literature DB >> 16672535

Development and validation of an oligonucleotide microarray for detection of multiple virulence and antimicrobial resistance genes in Escherichia coli.

Guillaume Bruant1, Christine Maynard, Sadjia Bekal, Isabelle Gaucher, Luke Masson, Roland Brousseau, Josée Harel.   

Abstract

An oligonucleotide microarray detecting 189 Escherichia coli virulence genes or markers and 30 antimicrobial resistance genes was designed and validated using DNA from known reference strains. This microarray was confirmed to be a powerful diagnostic tool for monitoring emerging E. coli pathotypes and antimicrobial resistance, as well as for environmental, epidemiological, and phylogenetic studies including the evaluation of genome plasticity.

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Year:  2006        PMID： 16672535      PMCID： PMC1472324          DOI： 10.1128/AEM.72.5.3780-3784.2006

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  34 in total

1.  Development and evaluation of functional gene arrays for detection of selected genes in the environment.

Authors:  L Wu; D K Thompson; G Li; R A Hurt; J M Tiedje; J Zhou
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2.  Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays.

Authors:  J C Cho; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

3.  Subtraction-coupled custom microarray analysis for gene discovery and gene expression studies in the CNS.

Authors:  Joseph D Dougherty; Daniel H Geschwind
Journal:  Chem Senses       Date:  2002-03       Impact factor: 3.160

4.  Detection of plasmid-mediated AmpC beta-lactamase genes in clinical isolates by using multiplex PCR.

Authors:  F Javier Pérez-Pérez; Nancy D Hanson
Journal:  J Clin Microbiol       Date:  2002-06       Impact factor: 5.948

5.  Rapid and simple determination of the Escherichia coli phylogenetic group.

Authors:  O Clermont; S Bonacorsi; E Bingen
Journal:  Appl Environ Microbiol       Date:  2000-10       Impact factor: 4.792

6.  Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

Authors:  R A Welch; V Burland; G Plunkett; P Redford; P Roesch; D Rasko; E L Buckles; S-R Liou; A Boutin; J Hackett; D Stroud; G F Mayhew; D J Rose; S Zhou; D C Schwartz; N T Perna; H L T Mobley; M S Donnenberg; F R Blattner
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-05       Impact factor: 11.205

7.  Virulence typing of Escherichia coli using microarrays.

Authors:  C van Ijperen; P Kuhnert; J Frey; J P Clewley
Journal:  Mol Cell Probes       Date:  2002-10       Impact factor: 2.365

8.  Gene clusters encoding the cytotoxic necrotizing factor type 1, Prs-fimbriae and alpha-hemolysin form the pathogenicity island II of the uropathogenic Escherichia coli strain J96.

Authors:  G Blum; V Falbo; A Caprioli; J Hacker
Journal:  FEMS Microbiol Lett       Date:  1995-02-15       Impact factor: 2.742

9.  Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays.

Authors:  J Small; D R Call; F J Brockman; T M Straub; D P Chandler
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

10.  Microarray analysis of microbial virulence factors.

Authors:  V Chizhikov; A Rasooly; K Chumakov; D D Levy
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792
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  43 in total

1.  Discovery of a gene conferring multiple-aminoglycoside resistance in Escherichia coli.

Authors:  Margaret A Davis; Katherine N K Baker; Lisa H Orfe; Devendra H Shah; Thomas E Besser; Douglas R Call
Journal:  Antimicrob Agents Chemother       Date:  2010-04-05       Impact factor: 5.191

2.  One test microbial diagnostic microarray for identification of Mycoplasma mycoides subsp. mycoides and other Mycoplasma species.

Authors:  A Tonelli; F Sacchini; I Krasteva; K Zilli; M Scacchia; C Beaurepaire; A Nantel; A Pini
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

3.  A virulence and antimicrobial resistance DNA microarray detects a high frequency of virulence genes in Escherichia coli isolates from Great Lakes recreational waters.

Authors:  Katia Hamelin; Guillaume Bruant; Abdel El-Shaarawi; Stephen Hill; Thomas A Edge; Sadjia Bekal; John Morris Fairbrother; Josée Harel; Christine Maynard; Luke Masson; Roland Brousseau
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

4.  Distribution of antimicrobial resistance and virulence genes in Enterococcus spp. and characterization of isolates from broiler chickens.

Authors:  Moussa S Diarra; Heidi Rempel; Julie Champagne; Luke Masson; Jane Pritchard; Edward Topp
Journal:  Appl Environ Microbiol       Date:  2010-10-22       Impact factor: 4.792

5.  The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities.

Authors:  Yong-Jin Lee; Joy D van Nostrand; Qichao Tu; Zhenmei Lu; Lei Cheng; Tong Yuan; Ye Deng; Michelle Q Carter; Zhili He; Liyou Wu; Fang Yang; Jian Xu; Jizhong Zhou
Journal:  ISME J       Date:  2013-06-13       Impact factor: 10.302

6.  Phylogenetic backgrounds and virulence profiles of atypical enteropathogenic Escherichia coli strains from a case-control study using multilocus sequence typing and DNA microarray analysis.

Authors:  Jan Egil Afset; Endre Anderssen; Guillaume Bruant; Josée Harel; Lothar Wieler; Kåre Bergh
Journal:  J Clin Microbiol       Date:  2008-05-07       Impact factor: 5.948

7.  Development of a DNA microarray for enterococcal species, virulence, and antibiotic resistance gene determinations among isolates from poultry.

Authors:  J Champagne; M S Diarra; H Rempel; E Topp; C W Greer; J Harel; L Masson
Journal:  Appl Environ Microbiol       Date:  2011-02-18       Impact factor: 4.792

8.  Integrated detection of extended-spectrum-beta-lactam resistance by DNA microarray-based genotyping of TEM, SHV, and CTX-M genes.

Authors:  Dirk M Leinberger; Verena Grimm; Maya Rubtsova; Jan Weile; Klaus Schröppel; Thomas A Wichelhaus; Cornelius Knabbe; Rolf D Schmid; Till T Bachmann
Journal:  J Clin Microbiol       Date:  2009-12-09       Impact factor: 5.948

9.  Identification of potentially diarrheagenic atypical enteropathogenic Escherichia coli strains present in Canadian food animals at slaughter and in retail meats.

Authors:  Raven Comery; Ajitha Thanabalasuriar; Philippe Garneau; Andrea Portt; Patrick Boerlin; Richard J Reid-Smith; Josée Harel; Amee R Manges; Samantha Gruenheid
Journal:  Appl Environ Microbiol       Date:  2013-04-12       Impact factor: 4.792

10.  Impact of feed supplementation with antimicrobial agents on growth performance of broiler chickens, Clostridium perfringens and enterococcus counts, and antibiotic resistance phenotypes and distribution of antimicrobial resistance determinants in Escherichia coli isolates.

Authors:  Moussa S Diarra; Fred G Silversides; Fatoumata Diarrassouba; Jane Pritchard; Luke Masson; Roland Brousseau; Claudie Bonnet; Pascal Delaquis; Susan Bach; Brent J Skura; Edward Topp
Journal:  Appl Environ Microbiol       Date:  2007-09-07       Impact factor: 4.792
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