Literature DB >> 16672260

Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data.

Fei Pan1, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, Jianjun Hu, Xianghong Jasmine Zhou.   

Abstract

The rapid accumulation of microarray data translates into an urgent need for tools to perform integrative microarray analysis. Integrative Array Analyzer is a comprehensive analysis and visualization software toolkit, which aims to facilitate the reuse of the large amount of cross-platform and cross-species microarray data. It is composed of the data preprocess module, the co-expression analysis module, the differential expression analysis module, the functional and transcriptional annotation module and the graph visualization module.

Mesh：

Year:  2006        PMID： 16672260     DOI： 10.1093/bioinformatics/btl163

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  WebArrayDB: cross-platform microarray data analysis and public data repository.

Authors:  Xiao-Qin Xia; Michael McClelland; Steffen Porwollik; Wenzhi Song; Xianling Cong; Yipeng Wang
Journal:  Bioinformatics       Date:  2009-07-14       Impact factor: 6.937

2.  MetaOmics: analysis pipeline and browser-based software suite for transcriptomic meta-analysis.

Authors:  Tianzhou Ma; Zhiguang Huo; Anche Kuo; Li Zhu; Zhou Fang; Xiangrui Zeng; Chien-Wei Lin; Silvia Liu; Lin Wang; Peng Liu; Tanbin Rahman; Lun-Ching Chang; Sunghwan Kim; Jia Li; Yongseok Park; Chi Song; Steffi Oesterreich; Etienne Sibille; George C Tseng
Journal:  Bioinformatics       Date:  2019-05-01       Impact factor: 6.937

Review 3.  Comprehensive literature review and statistical considerations for microarray meta-analysis.

Authors:  George C Tseng; Debashis Ghosh; Eleanor Feingold
Journal:  Nucleic Acids Res       Date:  2012-01-19       Impact factor: 16.971

4.  Consistency of predictive signature genes and classifiers generated using different microarray platforms.

Authors:  X Fan; E K Lobenhofer; M Chen; W Shi; J Huang; J Luo; J Zhang; S J Walker; T-M Chu; L Li; R Wolfinger; W Bao; R S Paules; P R Bushel; J Li; T Shi; T Nikolskaya; Y Nikolsky; H Hong; Y Deng; Y Cheng; H Fang; L Shi; W Tong
Journal:  Pharmacogenomics J       Date:  2010-08       Impact factor: 3.550

5.  Microarray data analysis and mining tools.

Authors:  Saravanakumar Selvaraj; Jeyakumar Natarajan
Journal:  Bioinformation       Date:  2011-04-22

6.  Integrative analysis of many weighted co-expression networks using tensor computation.

Authors:  Wenyuan Li; Chun-Chi Liu; Tong Zhang; Haifeng Li; Michael S Waterman; Xianghong Jasmine Zhou
Journal:  PLoS Comput Biol       Date:  2011-06-16       Impact factor: 4.475

7.  Strategies for aggregating gene expression data: the collapseRows R function.

Authors:  Jeremy A Miller; Chaochao Cai; Peter Langfelder; Daniel H Geschwind; Sunil M Kurian; Daniel R Salomon; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2011-08-04       Impact factor: 3.169

8.  BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data.

Authors:  Joana P Gonçalves; Sara C Madeira; Arlindo L Oliveira
Journal:  BMC Res Notes       Date:  2009-07-07
  8 in total

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