Literature DB >> 16672259

TopoICE-R: 3D visualization modeling the topology of DNA recombination.

Isabel K Darcy1, Robert G Scharein.   

Abstract

UNLABELLED: TopoICE-R is a three-dimensional visualization and manipulation software for solving 2-string tangle equations and can be used to model the topology of DNA bound by proteins such as recombinases and topoisomerases. AVAILABILITY: This software, manual and example files are available at www.knotplot.com/download for Linux, Windows and Mac.

Mesh：

Substances：

Year:  2006        PMID： 16672259     DOI： 10.1093/bioinformatics/btl164

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  4 in total

1.  FtsK-dependent XerCD-dif recombination unlinks replication catenanes in a stepwise manner.

Authors:  Koya Shimokawa; Kai Ishihara; Ian Grainge; David J Sherratt; Mariel Vazquez
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

2.  Coloring the Mu transpososome.

Authors:  Isabel K Darcy; Jeff Chang; Nathan Druivenga; Colin McKinney; Ram K Medikonduri; Stacy Mills; Junalyn Navarra-Madsen; Arun Ponnusamy; Jesse Sweet; Travis Thompson
Journal:  BMC Bioinformatics       Date:  2006-10-05       Impact factor: 3.169

3.  3D visualization software to analyze topological outcomes of topoisomerase reactions.

Authors:  I K Darcy; R G Scharein; A Stasiak
Journal:  Nucleic Acids Res       Date:  2008-04-24       Impact factor: 16.971

4.  A topological analysis of difference topology experiments of condensin with topoisomerase II.

Authors:  Soojeong Kim; Isabel K Darcy
Journal:  Biol Open       Date:  2020-04-03       Impact factor: 2.422
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.