Literature DB >> 16670967

Learning from small fry: the zebrafish as a genetic model organism for aquaculture fish species.

Ralf Dahm1, Robert Geisler.   

Abstract

In recent years, the zebrafish has become one of the most prominent vertebrate model organisms used to study the genetics underlying development, normal body function, and disease. The growing interest in zebrafish research was paralleled by an increase in tools and methods available to study zebrafish. While zebrafish research initially centered on mutagenesis screens (forward genetics), recent years saw the establishment of reverse genetic methods (morpholino knock-down, TILLING). In addition, increasingly sophisticated protocols for generating transgenic zebrafish have been developed and microarrays are now available to characterize gene expression on a near genome-wide scale. The identification of loci underlying specific traits is aided by genetic, physical, and radiation hybrid maps of the zebrafish genome and the zebrafish genome project. As genomic resources for aquacultural species are increasingly being generated, a meaningful interaction between zebrafish and aquacultural research now appears to be possible and beneficial for both sides. In particular, research on nutrition and growth, stress, and disease resistance in the zebrafish can be expected to produce results applicable to aquacultural fish, for example, by improving husbandry and formulated feeds. Forward and reverse genetics approaches in the zebrafish, together with the known conservation of synteny between the species, offer the potential to identify and verify candidate genes for quantitative trait loci (QTLs) to be used in marker-assisted breeding. Moreover, some technologies from the zebrafish field such as TILLING may be directly transferable to aquacultural research and production.

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Year:  2006        PMID: 16670967     DOI: 10.1007/s10126-006-5139-0

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  77 in total

1.  Radiation hybrid mapping of the zebrafish genome.

Authors:  N A Hukriede; L Joly; M Tsang; J Miles; P Tellis; J A Epstein; W B Barbazuk; F N Li; B Paw; J H Postlethwait; T J Hudson; L I Zon; J D McPherson; M Chevrette; I B Dawid; S L Johnson; M Ekker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Double-stranded RNA induces specific developmental defects in zebrafish embryos.

Authors:  A Wargelius; S Ellingsen; A Fjose
Journal:  Biochem Biophys Res Commun       Date:  1999-09-16       Impact factor: 3.575

Review 3.  The mutagenic action of N-ethyl-N-nitrosourea in the mouse.

Authors:  J K Noveroske; J S Weber; M J Justice
Journal:  Mamm Genome       Date:  2000-07       Impact factor: 2.957

4.  E-box function in a period gene repressed by light.

Authors:  Daniela Vallone; Srinivas Babu Gondi; David Whitmore; Nicholas S Foulkes
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-15       Impact factor: 11.205

5.  Bacterial artificial chromosome (BAC) clones and the current clone map of the zebrafish genome.

Authors:  Romke Koch; Gerd-Jörg Rauch; Sean Humphray; T Robert Geisler; Ronald Plasterk
Journal:  Methods Cell Biol       Date:  2004       Impact factor: 1.441

6.  Identification of pepsinogen gene in the genome of stomachless fish, Takifugu rubripes.

Authors:  Tadahide Kurokawa; Susumu Uji; Tohru Suzuki
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2005-01       Impact factor: 2.231

7.  Efficient gene delivery and gene expression in zebrafish using the Sleeping Beauty transposon.

Authors:  Ann E Davidson; Darius Balciunas; Deanna Mohn; Jennifer Shaffer; Spencer Hermanson; Sridhar Sivasubbu; M Pat Cliff; Perry B Hackett; Stephen C Ekker
Journal:  Dev Biol       Date:  2003-11-15       Impact factor: 3.582

8.  Emerging pathologies in aquaculture: effects on production and food safety.

Authors:  C Ghittino; M Latini; F Agnetti; C Panzieri; L Lauro; R Ciappelloni; G Petracca
Journal:  Vet Res Commun       Date:  2003-09       Impact factor: 2.459

Review 9.  Medaka genomics: a bridge between mutant phenotype and gene function.

Authors:  Kiyoshi Naruse; Hiroshi Hori; Nobuyoshi Shimizu; Yuji Kohara; Hiroyuki Takeda
Journal:  Mech Dev       Date:  2004-07       Impact factor: 1.882

10.  Medaka as a research organism: past, present and future.

Authors:  Akihiro Shima; Hiroshi Mitani
Journal:  Mech Dev       Date:  2004-07       Impact factor: 1.882

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  52 in total

Review 1.  Fluorescent proteins and their use in marine biosciences, biotechnology, and proteomics.

Authors:  Gabor Mocz
Journal:  Mar Biotechnol (NY)       Date:  2007-03-19       Impact factor: 3.619

Review 2.  A review of the functionality of probiotics in the larviculture food chain.

Authors:  Nguyen Thi Ngoc Tinh; Kristof Dierckens; Patrick Sorgeloos; Peter Bossier
Journal:  Mar Biotechnol (NY)       Date:  2007-11-27       Impact factor: 3.619

3.  Site-directed gene integration in transgenic zebrafish mediated by cre recombinase using a combination of mutant lox sites.

Authors:  Wei-yi Liu; Yun Wang; Yao Qin; Ya-ping Wang; Zuo-yan Zhu
Journal:  Mar Biotechnol (NY)       Date:  2007-05-15       Impact factor: 3.619

4.  Teratological effects of a panel of sixty water-soluble toxicants on zebrafish development.

Authors:  Shaukat Ali; Jeffrey Aalders; Michael K Richardson
Journal:  Zebrafish       Date:  2014-03-20       Impact factor: 1.985

Review 5.  Immunological control of fish diseases.

Authors:  Bergljot Magnadottir
Journal:  Mar Biotechnol (NY)       Date:  2010-03-30       Impact factor: 3.619

Review 6.  Investigating the genetics of visual processing, function and behaviour in zebrafish.

Authors:  Sabine L Renninger; Helia B Schonthaler; Stephan C F Neuhauss; Ralf Dahm
Journal:  Neurogenetics       Date:  2011-01-26       Impact factor: 2.660

7.  Antibiotic treatment of zebrafish mycobacteriosis: tolerance and efficacy of treatments with tigecycline and clarithromycin.

Authors:  C T Chang; K M Doerr; C M Whipps
Journal:  J Fish Dis       Date:  2017-04-19       Impact factor: 2.767

8.  The development of zebrafish tendon and ligament progenitors.

Authors:  Jessica W Chen; Jenna L Galloway
Journal:  Development       Date:  2014-05       Impact factor: 6.868

9.  Inducible male infertility by targeted cell ablation in zebrafish testis.

Authors:  Chia-Chun Hsu; Min-Fon Hou; Jiann-Ruey Hong; Jen-Leih Wu; Guor Mour Her
Journal:  Mar Biotechnol (NY)       Date:  2009-11-24       Impact factor: 3.619

10.  The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing.

Authors:  Heiner Kuhl; Alfred Beck; Grzegorz Wozniak; Adelino V M Canario; Filip A M Volckaert; Richard Reinhardt
Journal:  BMC Genomics       Date:  2010-01-27       Impact factor: 3.969

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