Literature DB >> 16663970

A comparison of methods for determining compartmental analysis parameters.

P T Rygiewicz1, C S Bledsoe, A D Glass.   

Abstract

The traditional method for determining compartmental analysis parameters relies on a visual selection of data points to be used for regression of data from each cellular compartment. This method is appropriate when the compartments are kinetically discrete and are easily discernible. However, where treatment effects on compartment parameters are being evaluated, a more objective method for determining initial parameters is desirable.Three methods were examined for determining initial isotopic contents and half-times of (86)Rb elution from cellular compartments using theoretical data with known parameters. Experimental data from roots of Douglas fir (Pseudotsuga menziesii [Mirb.] Franco) and barley (Hordeum vulgare L.) intact seedlings were also used. The three methods were a visually assisted, linear regression on data of semilog plot of isotope elution versus time, a microcomputer-assisted, linear regression on semilog plot where maximization of the square of the correlation coefficient (r(2)) was the criterion to determine data points needed for each regression and a mainframe computer-assisted, direct nonlinear regression on elution data using a model of the sum of three exponential decay functions. The visual method resulted in the least accurate estimates of compartmental analysis parameters. The microcomputer-assisted and nonlinear regression methods calculated the parameters equally well.

Entities:  

Year:  1984        PMID: 16663970      PMCID: PMC1064405          DOI: 10.1104/pp.76.4.913

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  3 in total

1.  Compartmentation and exchange of chloride in carrot root tissue.

Authors:  W J Cram
Journal:  Biochim Biophys Acta       Date:  1968-11-05

2.  Varietal differences in potassium uptake by barley.

Authors:  A D Glass
Journal:  Plant Physiol       Date:  1980-01       Impact factor: 8.340

3.  Ion transport in Nitellopsis obtusa.

Authors:  E A MACROBBIE; J DAINTY
Journal:  J Gen Physiol       Date:  1958-11-20       Impact factor: 4.086

  3 in total
  12 in total

1.  Compartmental efflux analysis: an evaluation of the technique and its limitations.

Authors:  J M Cheeseman
Journal:  Plant Physiol       Date:  1986-04       Impact factor: 8.340

2.  Fluxes of (86)Rb (+) in "isolated" guard cells of Vicia faba L.

Authors:  H M Brindley
Journal:  Planta       Date:  1990-06       Impact factor: 4.116

3.  Effects of periodic fluctuations of photon flux density on anatomical and photosynthetic characteristics of soybean leaves.

Authors:  J P Gaudillere; J J Drevon; J P Bernoud; F Jardinet; M Euvrard
Journal:  Photosynth Res       Date:  1987-01       Impact factor: 3.573

4.  Vacuolar Release of 1-(Malonylamino)cyclopropane-1-Carboxylic Acid, the Conjugated Form of the Ethylene Precursor.

Authors:  M A Pedreño; M Bouzayen; J C Pech; G Marigo; A Latché
Journal:  Plant Physiol       Date:  1991-12       Impact factor: 8.340

5.  Compartmental efflux analysis and removal of extracellular cadmium from roots.

Authors:  W E Rauser
Journal:  Plant Physiol       Date:  1987-09       Impact factor: 8.340

6.  Intracellular Sites of Synthesis and Storage of 1-(Malonylamino)cyclopropane-1-Carboxylic Acid in Acer pseudoplatanus Cells.

Authors:  M Bouzayen; A Latché; G Alibert; J C Pech
Journal:  Plant Physiol       Date:  1988-11       Impact factor: 8.340

7.  Transport and Compartmentation of 1-Aminocyclopropane-1-Carboxylic Acid and Its Structural Analog, alpha-Aminoisobutyric Acid, in Tomato Pericarp Slices.

Authors:  R A Saftner; J E Baker
Journal:  Plant Physiol       Date:  1987-06       Impact factor: 8.340

8.  Ammonium Uptake by Rice Roots (III. Electrophysiology).

Authors:  M. Y. Wang; ADM. Glass; J. E. Shaff; L. V. Kochian
Journal:  Plant Physiol       Date:  1994-03       Impact factor: 8.340

9.  Potassium Fluxes in Chlamydomonas reinhardtii (II. Compartmental Analysis).

Authors:  B. Malhotra; ADM. Glass
Journal:  Plant Physiol       Date:  1995-08       Impact factor: 8.340

10.  Evidence for symplastic involvement in the radial movement of calcium in onion roots.

Authors:  Ewa Cholewa; Carol A Peterson
Journal:  Plant Physiol       Date:  2004-04-02       Impact factor: 8.340

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