Literature DB >> 16661344

Reassociation Kinetics and Cytophotometric Characterization of Peanut (Arachis hypogaea L.) DNA.

S S Dhillon1, A V Rake, J P Miksche.   

Abstract

The base composition of peanut (var. NC-17) DNA determined from thermal denaturation profiles showed an average guanine plus cystosine content of 34% which was in close approximation to 36% guanine plus cytosine calculated from the buoyant density. Buoyant density also indicated the absence of satellite DNA. The genome size, 2.0 x 10(9) base pairs, as determined by reassociation kinetics of the single copy DNA was close to the genome size determined by cytophotometry, 2.1 x 10(9) base pairs. Peanut DNA averaging 450 to 600 base pairs long, reassociated in phosphate buffer and fractionated by hydroxylapatite, indicated a DNA genome composition of 36% nonrepetitive or single copy DNA; reassociation in formamide and followed by optical methods indicated the repetitive DNA possesses highly repeated, intermediately repeated and rarely repeated components of DNA with DNA sequences repeated on the average about 38,000, 6,700, and 200 times each. Different criteria of reassociation in formamide revealed further subdivisions of these four separate components of DNA. The DNA of above mentioned NC-17 variety compared to Florigiant variety showed no differences in thermal denaturation profiles, buoyant density, or in genome size.

Entities:  

Year:  1980        PMID: 16661344      PMCID: PMC440494          DOI: 10.1104/pp.65.6.1121

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  27 in total

1.  Studies on nucleic acid reassociation kinetics: reactivity of single-stranded tails in DNA-DNA renaturation.

Authors:  M J Smith; R J Britten; E H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

2.  Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation.

Authors:  R J Britten; E H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  1976-02       Impact factor: 11.205

3.  Localisation of satellite DNA sequences in nuclei and chromosomes of two plants.

Authors:  J N Timmis; B Deumling; J Ingle
Journal:  Nature       Date:  1975-09-11       Impact factor: 49.962

4.  Developmental biochemistry of cotton seed embryogenesis and germination. VII. Characterization of the cotton genome.

Authors:  V Walbot; L S Dure
Journal:  J Mol Biol       Date:  1976-03-15       Impact factor: 5.469

5.  The nature of residual Escherichia coli DNA after degradation induced by ionizing radiation.

Authors:  A V Rake; E C Pollard
Journal:  Radiat Res       Date:  1972-05       Impact factor: 2.841

6.  Rodent DNA reassociation kinetics.

Authors:  L Santiago; A V Rake
Journal:  Biochem Genet       Date:  1973-07       Impact factor: 1.890

7.  Analysis of repeating DNA sequences by reassociation.

Authors:  R J Britten; D E Graham; B R Neufeld
Journal:  Methods Enzymol       Date:  1974       Impact factor: 1.600

8.  Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.

Authors:  R J Britten; D E Kohne
Journal:  Science       Date:  1968-08-09       Impact factor: 47.728

Review 9.  Chromosome structure.

Authors:  H Ris; D F Kubai
Journal:  Annu Rev Genet       Date:  1970       Impact factor: 16.830

10.  Effect of methylation of cytosine residues on the buoyant density of DNA in caesium chloride solution.

Authors:  J T Kirk
Journal:  J Mol Biol       Date:  1967-08-28       Impact factor: 5.469

View more
  13 in total

1.  The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Authors:  David John Bertioli; Steven B Cannon; Lutz Froenicke; Guodong Huang; Andrew D Farmer; Ethalinda K S Cannon; Xin Liu; Dongying Gao; Josh Clevenger; Sudhansu Dash; Longhui Ren; Márcio C Moretzsohn; Kenta Shirasawa; Wei Huang; Bruna Vidigal; Brian Abernathy; Ye Chu; Chad E Niederhuth; Pooja Umale; Ana Cláudia G Araújo; Alexander Kozik; Kyung Do Kim; Mark D Burow; Rajeev K Varshney; Xingjun Wang; Xinyou Zhang; Noelle Barkley; Patrícia M Guimarães; Sachiko Isobe; Baozhu Guo; Boshou Liao; H Thomas Stalker; Robert J Schmitz; Brian E Scheffler; Soraya C M Leal-Bertioli; Xu Xun; Scott A Jackson; Richard Michelmore; Peggy Ozias-Akins
Journal:  Nat Genet       Date:  2016-02-22       Impact factor: 38.330

2.  High diversity in DNA of soil bacteria.

Authors:  V Torsvik; J Goksøyr; F L Daae
Journal:  Appl Environ Microbiol       Date:  1990-03       Impact factor: 4.792

3.  The repetitive component of the A genome of peanut (Arachis hypogaea) and its role in remodelling intergenic sequence space since its evolutionary divergence from the B genome.

Authors:  David J Bertioli; Bruna Vidigal; Stephan Nielen; Milind B Ratnaparkhe; Tae-Ho Lee; Soraya C M Leal-Bertioli; Changsoo Kim; Patricia M Guimarães; Guillermo Seijo; Trude Schwarzacher; Andrew H Paterson; Pat Heslop-Harrison; Ana C G Araujo
Journal:  Ann Bot       Date:  2013-07-04       Impact factor: 4.357

4.  Comparative repeatome analysis reveals new evidence on genome evolution in wild diploid Arachis (Fabaceae) species.

Authors:  Sergio S Samoluk; Magdalena Vaio; Alejandra M Ortíz; Laura M I Chalup; Germán Robledo; David J Bertioli; Guillermo Seijo
Journal:  Planta       Date:  2022-07-27       Impact factor: 4.540

5.  Homology modeling, molecular docking, and dynamics of two α-methyl-D-mannoside-specific lectins from Arachis genus.

Authors:  Kyria Santiago Nascimento; David Alencar Araripe; Vanir Reis Pinto-Junior; Vinicius Jose Silva Osterne; Francisco William Viana Martins; Antonio Hadson Bastos Neco; Gil Aquino Farias; Benildo Sousa Cavada
Journal:  J Mol Model       Date:  2018-08-25       Impact factor: 1.810

6.  Stable ploidy levels in long-term callus cultures of loblolly pine.

Authors:  C I Franklin; R L Mott; T M Vuke
Journal:  Plant Cell Rep       Date:  1989-02       Impact factor: 4.570

7.  DNA, RNA, protein and heterochromatin changes during embryo development and germination of soybean (Glycine max L.).

Authors:  S S Dhillon; J P Miksche
Journal:  Histochem J       Date:  1983-01

8.  The genome structure of Arachis hypogaea (Linnaeus, 1753) and an induced Arachis allotetraploid revealed by molecular cytogenetics.

Authors:  Eliza F de M B do Nascimento; Bruna V Dos Santos; Lara O C Marques; Patricia M Guimarães; Ana C M Brasileiro; Soraya C M Leal-Bertioli; David J Bertioli; Ana C G Araujo
Journal:  Comp Cytogenet       Date:  2018-03-14       Impact factor: 1.800

9.  Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA.

Authors:  Sergio S Samoluk; Laura M I Chalup; Carolina Chavarro; Germán Robledo; David J Bertioli; Scott A Jackson; Guillermo Seijo
Journal:  Planta       Date:  2019-01-24       Impact factor: 4.116

10.  Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis).

Authors:  Qing Lu; Haifen Li; Yanbin Hong; Guoqiang Zhang; Shijie Wen; Xingyu Li; Guiyuan Zhou; Shaoxiong Li; Hao Liu; Haiyan Liu; Zhongjian Liu; Rajeev K Varshney; Xiaoping Chen; Xuanqiang Liang
Journal:  Front Plant Sci       Date:  2018-05-03       Impact factor: 5.753

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.