Literature DB >> 16651373

Integrating biological data through the genome.

Gabrielle A Reeves1, Janet M Thornton.   

Abstract

Owing to the ongoing success of the genome sequencing and structural genomics projects, the increase in both sequence and structural data is rapid. The development of tools for the annotation of sequence and structural data has become more important in the hope of keeping up with this data explosion. Scientists in this field have addressed these issues over the last 10 years and there now exists a wealth of methods and approaches to help interpret these data. However, there is no current way in which these methods can be incorporated easily so that the resulting annotations can be viewed together. This review discusses the development of these annotation methods and introduces the BioSapiens Network of Excellence, which has been formed in order to integrate the methods which have been developed in Europe.

Mesh:

Year:  2006        PMID: 16651373     DOI: 10.1093/hmg/ddl086

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  8 in total

1.  Statistical analysis of structural characteristics of protein Ca2+-binding sites.

Authors:  Michael Kirberger; Xue Wang; Hai Deng; Wei Yang; Guantao Chen; Jenny J Yang
Journal:  J Biol Inorg Chem       Date:  2008-07-02       Impact factor: 3.358

2.  The Protein Feature Ontology: a tool for the unification of protein feature annotations.

Authors:  Gabrielle A Reeves; Karen Eilbeck; Michele Magrane; Claire O'Donovan; Luisa Montecchi-Palazzi; Midori A Harris; Sandra Orchard; Rafael C Jimenez; Andreas Prlic; Tim J P Hubbard; Henning Hermjakob; Janet M Thornton
Journal:  Bioinformatics       Date:  2008-10-20       Impact factor: 6.937

3.  BLAST-based structural annotation of protein residues using Protein Data Bank.

Authors:  Harinder Singh; Gajendra P S Raghava
Journal:  Biol Direct       Date:  2016-01-25       Impact factor: 4.540

4.  AgBase: a unified resource for functional analysis in agriculture.

Authors:  Fiona M McCarthy; Susan M Bridges; Nan Wang; G Bryce Magee; W Paul Williams; Dawn S Luthe; Shane C Burgess
Journal:  Nucleic Acids Res       Date:  2006-11-29       Impact factor: 16.971

5.  Integrating biological data--the Distributed Annotation System.

Authors:  Andrew M Jenkinson; Mario Albrecht; Ewan Birney; Hagen Blankenburg; Thomas Down; Robert D Finn; Henning Hermjakob; Tim J P Hubbard; Rafael C Jimenez; Philip Jones; Andreas Kähäri; Eugene Kulesha; José R Macías; Gabrielle A Reeves; Andreas Prlić
Journal:  BMC Bioinformatics       Date:  2008-07-22       Impact factor: 3.169

6.  Structural characterization of single nucleotide variants at ligand binding sites and enzyme active sites of human proteins.

Authors:  Kazunori D Yamada; Hafumi Nishi; Junichi Nakata; Kengo Kinoshita
Journal:  Biophys Physicobiol       Date:  2016-07-14

Review 7.  Protein function annotation by homology-based inference.

Authors:  Yaniv Loewenstein; Domenico Raimondo; Oliver C Redfern; James Watson; Dmitrij Frishman; Michal Linial; Christine Orengo; Janet Thornton; Anna Tramontano
Journal:  Genome Biol       Date:  2009-02-02       Impact factor: 13.583

8.  The Gene Ontology project in 2008.

Authors: 
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.