Literature DB >> 16646833

Error distribution for gene expression data.

Elizabeth Purdom1, Susan P Holmes.   

Abstract

We present a new instance of Laplace's second Law of Errors and show how it can be used in the analysis of data from microarray experiments. This error distribution is shown to fit microarray expression data much better than a normal distribution. The use of this distribution in a parametric bootstrap leads to more powerful tests as we show that the t-test is conservative in this setting. We propose a biological explanations for this distribution based on the Pareto distribution of the variables used to compute the log ratios.

Year:  2005        PMID: 16646833     DOI: 10.2202/1544-6115.1070

Source DB:  PubMed          Journal:  Stat Appl Genet Mol Biol        ISSN: 1544-6115


  16 in total

1.  Independent component analysis: mining microarray data for fundamental human gene expression modules.

Authors:  Jesse M Engreitz; Bernie J Daigle; Jonathan J Marshall; Russ B Altman
Journal:  J Biomed Inform       Date:  2010-07-07       Impact factor: 6.317

2.  Corrected-loss estimation for quantile regression with covariate measurement errors.

Authors:  Huixia Judy Wang; Leonard A Stefanski; Zhongyi Zhu
Journal:  Biometrika       Date:  2012-03-30       Impact factor: 2.445

3.  Estimating selection on synonymous codon usage from noisy experimental data.

Authors:  Edward W J Wallace; Edoardo M Airoldi; D Allan Drummond
Journal:  Mol Biol Evol       Date:  2013-03-14       Impact factor: 16.240

4.  T-type Corrected-Loss Estimation for Error-in-Variable Model.

Authors:  Jiao Jin; Liang Zhu; Xingwei Tong; Kirsten K Ness
Journal:  Commun Stat Theory Methods       Date:  2016-02-23       Impact factor: 0.893

5.  Normalization method for transcriptional studies of heterogeneous samples--simultaneous array normalization and identification of equivalent expression.

Authors:  Li-Xuan Qin; Jaya M Satagopan
Journal:  Stat Appl Genet Mol Biol       Date:  2009-02-04

6.  Assessing Population Level Genetic Instability via Moving Average.

Authors:  Samuel McDaniel; Jessica Minnier; Rebecca A Betensky; Gayatry Mohapatra; Yiping Shen; James F Gusella; David N Louis; Tianxi Cai
Journal:  Stat Biosci       Date:  2010-11-24

7.  A High-Dimensional Nonparametric Multivariate Test for Mean Vector.

Authors:  Lan Wang; Bo Peng; Runze Li
Journal:  J Am Stat Assoc       Date:  2016-01-15       Impact factor: 5.033

8.  Evaluating microarray-based classifiers: an overview.

Authors:  A-L Boulesteix; C Strobl; T Augustin; M Daumer
Journal:  Cancer Inform       Date:  2008-02-29

9.  Integrating external biological knowledge in the construction of regulatory networks from time-series expression data.

Authors:  Kenneth Lo; Adrian E Raftery; Kenneth M Dombek; Jun Zhu; Eric E Schadt; Roger E Bumgarner; Ka Yee Yeung
Journal:  BMC Syst Biol       Date:  2012-08-16

10.  Inference of gene pathways using mixture Bayesian networks.

Authors:  Younhee Ko; Chengxiang Zhai; Sandra Rodriguez-Zas
Journal:  BMC Syst Biol       Date:  2009-05-19
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